Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2Y4D

X-ray crystallographic structure of E. coli apo-EfeB

Replaces:  2WX6
Functional Information from GO Data
ChainGOidnamespacecontents
A0004325molecular_functionferrochelatase activity
A0004601molecular_functionperoxidase activity
A0005829cellular_componentcytosol
A0006974biological_processDNA damage response
A0016829molecular_functionlyase activity
A0020037molecular_functionheme binding
A0030288cellular_componentouter membrane-bounded periplasmic space
A0033212biological_processiron import into cell
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
A0098869biological_processcellular oxidant detoxification
B0004325molecular_functionferrochelatase activity
B0004601molecular_functionperoxidase activity
B0005829cellular_componentcytosol
B0006974biological_processDNA damage response
B0016829molecular_functionlyase activity
B0020037molecular_functionheme binding
B0030288cellular_componentouter membrane-bounded periplasmic space
B0033212biological_processiron import into cell
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
B0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1389
ChainResidue
AALA203
AARG261
AARG312
AHOH2297
AHOH2298

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1390
ChainResidue
AARG243
ALYS361
AHOH2299

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1391
ChainResidue
AHOH2301
AHOH2303
BGLY320
BVAL321
BHOH2220
AARG175

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1392
ChainResidue
AHIS105
ASER106
ALYS124
AHOH2304
AHOH2305
AHOH2306

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1393
ChainResidue
AARG15
AASN16
ATHR126
AARG127
AHOH2007
AHOH2129
AHOH2307

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1394
ChainResidue
AGLN241
ATHR322
AASN323
AHOH2257
AHOH2308
AHOH2309
AHOH2310
AHOH2311

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PG4 A 1395
ChainResidue
AGLU17
AALA135
AALA136
AARG172
ALYS187
AHOH2312
BASN323

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PG4 A 1396
ChainResidue
AALA298
AARG312
APHE333
ALEU351
AHOH2263
AHOH2315

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE ACT A 1397
ChainResidue
APRO32
AGLN33
AALA183
AALA184
ALYS187
AGLY188
AGOL1398
AHOH2316
AHOH2317

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1398
ChainResidue
AGLN19
ATHR31
APRO32
AALA184
ALYS187
AACT1397
AHOH2182
AHOH2318

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1399
ChainResidue
AALA72
APRO73
AGLU74
AGLY90
AHOH2319
AHOH2320
AHOH2321
BGLN264
BHOH2185

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1400
ChainResidue
AHIS273
AHIS275

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1401
ChainResidue
ALEU83
AHIS164
AHOH2322

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1389
ChainResidue
BGLY201
BTHR202
BALA203
BARG261
BARG312
BHOH2255

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1390
ChainResidue
BARG243
BLYS361
BHOH2212

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1391
ChainResidue
AGLY320
AVAL321
BARG175
BHOH2256

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1392
ChainResidue
BHIS105
BSER106
BLYS124
BHOH2081
BHOH2257
BHOH2258

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1393
ChainResidue
BARG172
BHOH2259
BHOH2260
ALYS375

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1394
ChainResidue
BARG79
BTHR346
BARG350
BHOH2261
BHOH2262
BHOH2263

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1395
ChainResidue
BARG62
BPRO73
BLEU83
BHIS164
BHOH2264

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PG4 B 1396
ChainResidue
BILE240
BHIS294
BMET310
BARG312
BPHE333
BLEU351
BHOH2235
BHOH2265
BHOH2266

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 1397
ChainResidue
APHE246
BGLU285

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1398
ChainResidue
BGLU17
BGLN19
BPRO32
BALA184
BLYS187
BHOH2267

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.11, ECO:0007744|PDB:2Y4E
ChainResidueDetails
AGLY201
AARG261
BGLY201
BARG261

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: proximal binding residue => ECO:0000269|Ref.11, ECO:0007744|PDB:2Y4F
ChainResidueDetails
AHIS294
BHIS294

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.11, ECO:0007744|PDB:2Y4F
ChainResidueDetails
AASN299
AARG312
BASN299
BARG312

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon