Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2XJO

Crystal structure of Streptococcus suis Dpr with nickel

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0006879	biological_process	intracellular iron ion homeostasis
A	0008199	molecular_function	ferric iron binding
A	0016491	molecular_function	oxidoreductase activity
A	0046872	molecular_function	metal ion binding
B	0005737	cellular_component	cytoplasm
B	0006879	biological_process	intracellular iron ion homeostasis
B	0008199	molecular_function	ferric iron binding
B	0016491	molecular_function	oxidoreductase activity
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0006879	biological_process	intracellular iron ion homeostasis
C	0008199	molecular_function	ferric iron binding
C	0016491	molecular_function	oxidoreductase activity
C	0046872	molecular_function	metal ion binding
D	0005737	cellular_component	cytoplasm
D	0006879	biological_process	intracellular iron ion homeostasis
D	0008199	molecular_function	ferric iron binding
D	0016491	molecular_function	oxidoreductase activity
D	0046872	molecular_function	metal ion binding
E	0005737	cellular_component	cytoplasm
E	0006879	biological_process	intracellular iron ion homeostasis
E	0008199	molecular_function	ferric iron binding
E	0016491	molecular_function	oxidoreductase activity
E	0046872	molecular_function	metal ion binding
F	0005737	cellular_component	cytoplasm
F	0006879	biological_process	intracellular iron ion homeostasis
F	0008199	molecular_function	ferric iron binding
F	0016491	molecular_function	oxidoreductase activity
F	0046872	molecular_function	metal ion binding
G	0005737	cellular_component	cytoplasm
G	0006879	biological_process	intracellular iron ion homeostasis
G	0008199	molecular_function	ferric iron binding
G	0016491	molecular_function	oxidoreductase activity
G	0046872	molecular_function	metal ion binding
H	0005737	cellular_component	cytoplasm
H	0006879	biological_process	intracellular iron ion homeostasis
H	0008199	molecular_function	ferric iron binding
H	0016491	molecular_function	oxidoreductase activity
H	0046872	molecular_function	metal ion binding
I	0005737	cellular_component	cytoplasm
I	0006879	biological_process	intracellular iron ion homeostasis
I	0008199	molecular_function	ferric iron binding
I	0016491	molecular_function	oxidoreductase activity
I	0046872	molecular_function	metal ion binding
J	0005737	cellular_component	cytoplasm
J	0006879	biological_process	intracellular iron ion homeostasis
J	0008199	molecular_function	ferric iron binding
J	0016491	molecular_function	oxidoreductase activity
J	0046872	molecular_function	metal ion binding
K	0005737	cellular_component	cytoplasm
K	0006879	biological_process	intracellular iron ion homeostasis
K	0008199	molecular_function	ferric iron binding
K	0016491	molecular_function	oxidoreductase activity
K	0046872	molecular_function	metal ion binding
L	0005737	cellular_component	cytoplasm
L	0006879	biological_process	intracellular iron ion homeostasis
L	0008199	molecular_function	ferric iron binding
L	0016491	molecular_function	oxidoreductase activity
L	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI A 1173

Chain	Residue
A	ASP74
A	GLU78
A	HOH2025
C	HIS47
C	HOH2011

site_id	AC2
Number of Residues	10
Details	BINDING SITE FOR RESIDUE EPE B 1173

Chain	Residue
F	ARG53
F	GLY54
F	HOH2071
J	GLY54
J	HOH2056
K	ASP137
B	GLY54
B	ILE57
B	HOH2084
B	HOH2092

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI B 1174

Chain	Residue
B	ASP74
B	GLU78
B	HOH2033
D	HIS47
D	HOH2024

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA B 1175

Chain	Residue
B	GLU113
B	HOH2057
B	HOH2062
K	HOH2051

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 1176

Chain	Residue
B	ALA169
B	LYS171
L	GLY84

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI C 1173

Chain	Residue
A	HIS47
A	HOH2014
A	HOH2017
C	ASP74
C	GLU78

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI D 1173

Chain	Residue
B	HIS47
D	ASP74
D	GLU78
D	HOH2037
D	HOH2042

site_id	AC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL D 1174

Chain	Residue
D	ILE111
D	HOH2017

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA D 1175

Chain	Residue
D	HOH2062
D	HOH2065
G	HOH2043

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI E 1173

Chain	Residue
E	ASP74
E	GLU78
G	HIS47
G	HOH2008
G	HOH2011

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL E 1174

Chain	Residue
A	GLY84
E	ALA169
E	LYS171

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI F 1173

Chain	Residue
F	ASP74
F	GLU78
F	HOH2031
H	HIS47
H	HOH2014

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA F 1174

Chain	Residue
F	LEU166
F	HOH2044
F	HOH2072
F	HOH2073
K	ASP24
K	GLU139

site_id	BC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CA F 1175

Chain	Residue
F	HOH2042

site_id	BC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EPE G 1173

Chain	Residue
D	GLY54
G	ARG53
G	GLY54
G	ILE57
G	HOH2046
I	GLY54

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI G 1174

Chain	Residue
E	HIS47
G	ASP74
G	GLU78
G	HOH2016
G	HOH2018

site_id	BC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL G 1175

Chain	Residue
B	GLY84
B	HOH2037
G	LYS171

site_id	BC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI H 1173

Chain	Residue
F	HIS47
F	HOH2020
H	ASP74
H	GLU78
H	HOH2022

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI I 1173

Chain	Residue
I	ASP74
I	GLU78
I	HOH2023
K	HIS47
K	HOH2014

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL I 1174

Chain	Residue
I	ILE111
I	HOH2007
I	HOH2012

site_id	CC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA I 1175

Chain	Residue
A	ASN108
I	HOH2007
I	HOH2039

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI J 1173

Chain	Residue
J	ASP74
J	GLU78
L	HIS47
L	HOH2012
L	HOH2014

site_id	CC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL J 1174

Chain	Residue
J	HOH2011
J	ILE111
J	GLU112

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA J 1175

Chain	Residue
B	HOH2086
J	HOH2039
J	HOH2041

site_id	CC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EPE K 1173

Chain	Residue
A	GLY54
G	GLU112
H	GLY54
K	GLY54
K	HOH2075

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI K 1174

Chain	Residue
I	HIS47
I	HOH2015
I	HOH2017
K	ASP74
K	GLU78

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CA K 1175

Chain	Residue
G	ASN108
G	HOH2026
K	HOH2068

site_id	DC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE EPE L 1173

Chain	Residue
C	ARG53
C	GLY54
E	ARG53
E	GLY54
E	ILE57
E	GLU138
E	HOH2005
E	HOH2036
L	ARG53
L	GLY54
L	HOH2055

site_id	DC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI L 1174

Chain	Residue
J	HIS47
J	HOH2015
L	ASP74
L	GLU78
L	HOH2024

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	24
Details	BINDING: BINDING => ECO:0000250

Chain	Residue	Details
A	HIS47
E	GLU78
F	HIS47
F	GLU78
G	HIS47
G	GLU78
H	HIS47
H	GLU78
I	HIS47
I	GLU78
J	HIS47
A	GLU78
J	GLU78
K	HIS47
K	GLU78
L	HIS47
L	GLU78
B	HIS47
B	GLU78
C	HIS47
C	GLU78
D	HIS47
D	GLU78
E	HIS47

site_id	SWS_FT_FI2
Number of Residues	12
Details	BINDING: in other chain => ECO:0000250

Chain	Residue	Details
A	ASP74
J	ASP74
K	ASP74
L	ASP74
B	ASP74
C	ASP74
D	ASP74
E	ASP74
F	ASP74
G	ASP74
H	ASP74
I	ASP74

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)