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2XCP

TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, 7,8- DIHYDRO-8-OXODEOXYGUANINE MODIFIED DNA AND dCTP - MAGNESIUM FORM

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1000
ChainResidue
AASP7
APHE8
AASP105
AHOH2120
ADCP5000

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1001
ChainResidue
BDCP5000
AHOH2130
BASP7
BPHE8
BASP105

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AASP294
AHOH2100
PDG9
PHOH2014

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1003
ChainResidue
BASP294
BHOH2085
EDG8
EDG9

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1004
ChainResidue
AASP7
AASP105
AGLU106
AHOH2120
AHOH2121
ADCP5000

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1005
ChainResidue
AHOH2126
AHOH2130
BASP7
BASP105
BGLU106
BDCP5000

site_idAC7
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DCP A 5000
ChainResidue
AASP7
APHE8
AASP9
ATYR10
APHE11
ATYR12
ATHR45
ATYR48
AARG51
AILE104
AASP105
ALYS159
AMG1000
AMG1004
AHOH2117
AHOH2118
AHOH2119
AHOH2120
AHOH2121
AHOH2122
AHOH2123
PDOC13
T8OG5

site_idAC8
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DCP B 5000
ChainResidue
AHOH2124
AHOH2126
AHOH2128
AHOH2129
AHOH2130
AHOH2131
AHOH2132
AHOH2133
BASP7
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BASP105
BLYS159
BMG1001
BMG1005
EDOC13
F8OG5

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

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PDB entries from 2024-07-17

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