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2WYD

The quorum quenching N-acyl homoserine lactone acylase PvdQ in complex with dodecanoic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
A0016811molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
A0017000biological_processantibiotic biosynthetic process
B0016787molecular_functionhydrolase activity
B0017000biological_processantibiotic biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 1547
ChainResidue
ALEU74
BPRO40
BGLY41
BHIS121
BHOH2292

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1170
ChainResidue
AASP72
AASP157
ALYS25
AASP26
AGLU70
ALEU71

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 1548
ChainResidue
AGLU49
ASER68
AALA69
AARG145
BPRO25
BASN27
BGLY28
BALA29
BMET30

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1171
ChainResidue
ATRP82
ALEU83
AGLN85
AARG144
BHOH2088

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1549
ChainResidue
BLEU43
BASP44
BASN166
BGLN167
BALA168
BHOH2034
BHOH2120

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1550
ChainResidue
BPHE380
BALA381
BLEU383
BGLY385
BALA386
BTRP387
BHOH2293

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1172
ChainResidue
ATRP93
ATHR136
AASP137
AHOH2135
AHOH2136
BLYS427

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1551
ChainResidue
BARG149
BALA238
BTRP239
BARG241
BALA248
BHOH2294

site_idAC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DAO B 1552
ChainResidue
ATHR143
ALEU146
BSER1
BPRO22
BHIS23
BPHE24
BTHR69
BVAL70
BVAL158
BTRP162
BHOH2295

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE DAO B 1553
ChainResidue
AGLU149
AGLY150
AGLN154
BHIS23
BPHE24
BPRO25
BMET30
BTRP186
BGLN465
BGLY477
BHOH2296

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 3s8r
ChainResidueDetails
BASN269
BSER1
BVAL70

246704

PDB entries from 2025-12-24

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