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2WEF

Human 3'(2'), 5'-bisphosphate nucleotidase 1 (BPNT1) in complex with AMP, PO4 and Magnesium

Functional Information from GO Data
ChainGOidnamespacecontents
A0004441molecular_functioninositol-1,4-bisphosphate 1-phosphatase activity
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0006139biological_processnucleobase-containing compound metabolic process
A0007399biological_processnervous system development
A0008441molecular_function3'(2'),5'-bisphosphate nucleotidase activity
A0016787molecular_functionhydrolase activity
A0046854biological_processphosphatidylinositol phosphate biosynthetic process
A0046872molecular_functionmetal ion binding
A0050427biological_process3'-phosphoadenosine 5'-phosphosulfate metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
AASP117
AASP120
AASP247
AMG402
APO4501
AAMP601
AHOH2206

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 402
ChainResidue
ALEU119
AMG401
APO4501
AHOH2038
AGLU74
AASP117

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 403
ChainResidue
AGLU74
APO4501
AHOH2033
AHOH2035
AHOH2064
AHOH2249

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE PO4 A 501
ChainResidue
AASP51
AGLU74
AASP117
ALEU119
AASP120
AGLY121
ATHR122
AMG401
AMG402
AMG403
AAMP601
AHOH2035
AHOH2038
AHOH2064
AHOH2206
AHOH2248
AHOH2249

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP A 601
ChainResidue
AASP120
ATHR195
AHIS198
AGLY220
ALYS224
APHE238
AGLY242
ACYS243
AASP247
AMG401
APO4501
AHOH2118
AHOH2206
AHOH2249
AHOH2250
AHOH2251

Functional Information from PROSITE/UniProt
site_idPS00629
Number of Residues13
DetailsIMP_1 Inositol monophosphatase family signature 1. VwVDPLDGTkeY.T
ChainResidueDetails
AVAL114-THR126

site_idPS00630
Number of Residues15
DetailsIMP_2 Inositol monophosphatase family signature 2. WDtCAPeVILhavGG
ChainResidueDetails
ATRP246-GLY260

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"Q9Z1N4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"APR-2009","submissionDatabase":"PDB data bank","title":"Human 3'(2'), 5'-bisphosphate nucleotidase 1 (BPNT1) in complex with AMP, PO4 and magnesium.","authoringGroup":["Structural genomics consortium (SGC)"]}},{"source":"PDB","id":"2WEF","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q9Z0S1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ima
ChainResidueDetails
AGLU74
ATHR122

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ima
ChainResidueDetails
AASP51
ATHR122
AASP247

242500

PDB entries from 2025-10-01

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