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2W9A

Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DGT A 594
ChainResidue
AASP7
AARG51
AMET76
AASP105
ALYS159
AMG1000
AMG1001
AMG1003
AHOH2002
AHOH2038
AHOH2039
APHE8
AHOH2040
AHOH2042
PDOC14
PHOH2009
TDC4
TO2G5
AASP9
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1000
ChainResidue
AASP7
AASP105
AGLU106
ADGT594
AHOH2040
PHOH2009

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1001
ChainResidue
AASP7
APHE8
AASP105
ADGT594

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AALA181
AILE186
AHOH2020
AHOH2023
PHOH2006

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1003
ChainResidue
ADGT594
AHOH2039
AHOH2041
AHOH2042
PDC13
PDOC14

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

222036

PDB entries from 2024-07-03

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