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2W40

Crystal structure of Plasmodium falciparum glycerol kinase with bound glycerol

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004370molecular_functionglycerol kinase activity
A0005524molecular_functionATP binding
A0005739cellular_componentmitochondrion
A0005975biological_processcarbohydrate metabolic process
A0006071biological_processglycerol metabolic process
A0006072biological_processglycerol-3-phosphate metabolic process
A0006641biological_processtriglyceride metabolic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
A0019563biological_processglycerol catabolic process
A0046167biological_processglycerol-3-phosphate biosynthetic process
B0000166molecular_functionnucleotide binding
B0004370molecular_functionglycerol kinase activity
B0005524molecular_functionATP binding
B0005739cellular_componentmitochondrion
B0005975biological_processcarbohydrate metabolic process
B0006071biological_processglycerol metabolic process
B0006072biological_processglycerol-3-phosphate metabolic process
B0006641biological_processtriglyceride metabolic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
B0019563biological_processglycerol catabolic process
B0046167biological_processglycerol-3-phosphate biosynthetic process
C0000166molecular_functionnucleotide binding
C0004370molecular_functionglycerol kinase activity
C0005524molecular_functionATP binding
C0005739cellular_componentmitochondrion
C0005975biological_processcarbohydrate metabolic process
C0006071biological_processglycerol metabolic process
C0006072biological_processglycerol-3-phosphate metabolic process
C0006641biological_processtriglyceride metabolic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
C0019563biological_processglycerol catabolic process
C0046167biological_processglycerol-3-phosphate biosynthetic process
D0000166molecular_functionnucleotide binding
D0004370molecular_functionglycerol kinase activity
D0005524molecular_functionATP binding
D0005739cellular_componentmitochondrion
D0005975biological_processcarbohydrate metabolic process
D0006071biological_processglycerol metabolic process
D0006072biological_processglycerol-3-phosphate metabolic process
D0006641biological_processtriglyceride metabolic process
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
D0019563biological_processglycerol catabolic process
D0046167biological_processglycerol-3-phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B1502
ChainResidue
BTYR293
BLYS294
BPHE295
BASP299
BLYS300
BLYS302

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B1503
ChainResidue
BSER219
BLYS294
BASP297
BHOH2232
BHOH2471
BVAL182
BILE217
BLYS218

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1502
ChainResidue
AVAL182
ALEU196
AILE217
ALYS218
ASER219
ALYS294
AASP297
AHOH2216

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C1502
ChainResidue
CVAL182
CILE217
CLYS218
CSER219
CLYS294
CASP297
CHOH2236
CHOH2471

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO D1502
ChainResidue
DVAL182
DILE217
DLYS218
DSER219
DLYS294
DASP297
DHOH2230
DHOH2462

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1503
ChainResidue
BTYR367
BGLY368
DARG363
DSER365
DTHR497

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B1504
ChainResidue
BGLN35
BTYR43
BSER314
BTRP318
BHOH2472
BHOH2473
BHOH2474
DPHE371

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A1503
ChainResidue
AGLN35
ATYR43
ASER314
ASER317
ATRP318
AHOH2058
AHOH2456
AHOH2457
CPHE371

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO D1504
ChainResidue
BPHE371
DGLN35
DTYR43
DSER314
DSER317
DTRP318
DHOH2066
DHOH2463
DHOH2464

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C1503
ChainResidue
APHE371
CGLN35
CTYR43
CSER314
CSER317
CTRP318
CHOH2472
CHOH2473
CHOH2474

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A1504
ChainResidue
AASN29
AASN30
AGLU440

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1504
ChainResidue
CLYS66
CVAL72
CILE73
CILE74
CASP234
CHOH2475

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1505
ChainResidue
DPHE17
DASN29
DASN30
DGLU440
DHOH2465

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C1505
ChainResidue
CLYS127
CMET202

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D1506
ChainResidue
DASP123
DLYS127
DHOH2466

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1505
ChainResidue
BHOH2171
BHOH2475
BLYS127
BMET202

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A1505
ChainResidue
ALYS127
AMET202
AILE205
AHOH2459

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1506
ChainResidue
CASN296
CASP299
CEDO1507
CGOL1524
CHOH2320
CHOH2435

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1506
ChainResidue
BSER137
BILE162
BGLY163
BASN164
BTHR188
BPRO215
BHOH2210

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1507
ChainResidue
CCYS221
CASN296
CLEU452
CGLU453
CEDO1506
CGOL1522

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1507
ChainResidue
BCYS221
BASN296
BGLU453
BLYS455
BGOL1523

site_idCC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1506
ChainResidue
AGLN125
ATHR130
ATYR131
ASER283
AGLY286
ALEU287
AHOH2460
AHOH2461

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D1507
ChainResidue
DTHR130
DTYR131
DGLY286
DLEU287
DHOH2467
DHOH2468

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1508
ChainResidue
BGLN125
BTHR130
BTYR131
BGLY286
BLEU287
BHOH2477
BHOH2478

site_idCC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C1508
ChainResidue
CGLN125
CTHR130
CTYR131
CGLY286
CLEU287
CHOH2477
CHOH2478

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1509
ChainResidue
BGLU200
BLYS204
BILE208
BTHR209
BMET211

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B1510
ChainResidue
BTRP198
BMET211
BLEU214
BPRO215
BGLU216
BEDO1516

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1509
ChainResidue
CTRP42
CGLU44
CTYR98
CASN99
CEDO1513
CHOH2479

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1511
ChainResidue
BILE62
BLYS66
BVAL72
BILE73
BILE74
BASP234
BHOH2480

site_idDC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO C1510
ChainResidue
AARG91
CTHR174
CASN177
CGLY225
CLEU226
CLYS228
CHOH2220
CHOH2480
CHOH2481
CHOH2482

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO D1508
ChainResidue
DTRP198
DMET211
DLEU214
DHOH2469

site_idDC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1512
ChainResidue
BTHR52
BTYR55
BHOH2481
BHOH2482

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1513
ChainResidue
BGLU44
BTYR98
BASN99
BHOH2483
BHOH2484

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C1511
ChainResidue
CASP46
CPRO47
CILE48
CPRO96
CTYR98
CASN99
CHOH2483

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C1512
ChainResidue
CVAL86
CILE162
CGLY163
CASN164
CTHR188
CLEU214
CPRO215
CHOH2484

site_idDC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO D1509
ChainResidue
DVAL86
DILE162
DGLY163
DASN164
DTHR188
DLEU214
DPRO215
DHOH2471

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1513
ChainResidue
CTYR98
CTRP143
CASN147
CASN148
CEDO1509
CHOH2485

site_idEC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO D1510
ChainResidue
BTHR370
BPHE371
BASN372
DCYS37
DLYS39
DPRO40
DGLY41
DTRP42
DTYR43
DHOH2138
DHOH2347

site_idEC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO A1507
ChainResidue
ACYS37
ALYS39
APRO40
AGLY41
ATRP42
ATYR43
AHOH2126
AHOH2341
CTHR370
CPHE371
CASN372

site_idEC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO B1514
ChainResidue
BCYS37
BLYS39
BPRO40
BGLY41
BTRP42
BTYR43
BHOH2132
BHOH2356
DTHR370
DPHE371
DASN372

site_idEC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C1514
ChainResidue
APHE371
AASN372
CLYS39
CGLY41
CTRP42
CLEU104
CTHR106
CSER351
CHOH2356

site_idEC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D1511
ChainResidue
DTYR55
DASN172
DLYS175
DSER229
DGLU230
DHIS231

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1515
ChainResidue
BILE92
BPHE171
BLYS175
BGLY176

site_idEC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO D1512
ChainResidue
DVAL281
DTYR282
DTHR284
DASP400

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1516
ChainResidue
BTRP198
BMET211
BEDO1510
BHOH2234
BHOH2485

site_idFC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1517
ChainResidue
BTRP42
BARG107
BHOH2070
BHOH2487

site_idFC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO D1513
ChainResidue
DASN122
DGLN125
DTYR282

site_idFC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1515
ChainResidue
CTHR341
CGLU384
CPHE388
CLYS486
CGLU489
CHOH2355

site_idFC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B1518
ChainResidue
BGLU259
BGLY277
BGLU278
BLYS279
BLYS302
BHOH2488

site_idFC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1519
ChainResidue
BTYR119
BASN120
BASP123
BHOH2475

site_idFC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1520
ChainResidue
BTHR341
BILE345
BGLU384
BPHE388
BLYS486
BGLU489
BHOH2489

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B1521
ChainResidue
BSER28
BASN29
BASN30
BGLU440

site_idFC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C1516
ChainResidue
CGLU392
CASP395
CSER396
CHOH2486
CHOH2487

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A1508
ChainResidue
APRO96
ATYR98
AASN99

site_idGC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO D1514
ChainResidue
DASN29
DASN56

site_idGC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A1509
ChainResidue
ATYR119
ALYS204
AILE205

site_idGC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C1517
ChainResidue
CPRO356
CHOH2487

site_idGC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1510
ChainResidue
AVAL86
AILE162
AGLY163
AASN164
ATHR188
ALEU214
APRO215
AHOH2191

site_idGC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1518
ChainResidue
CASN430
CTHR431
CLYS432
CHIS475
CSER476
CHOH2488

site_idGC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C1519
ChainResidue
CSER28
CASN29
CASN30

site_idGC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C1520
ChainResidue
CPRO233
CLEU236
CHOH2489

site_idGC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1515
ChainResidue
DSER116
DTYR119
DASN121
DHOH2472
DHOH2473

site_idGC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL C1521
ChainResidue
CGLN82
CARG83
CGLU84
CTRP103
CTYR135
CASP246
CGLN247
CPHE271
CHOH2006
CHOH2490

site_idHC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A1511
ChainResidue
AARG83
AGLU84
ATRP103
ATYR135
AASP246
AGLN247
APHE271
AHOH2462
AHOH2463

site_idHC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL D1516
ChainResidue
DGLN82
DARG83
DGLU84
DTRP103
DTYR135
DASP246
DGLN247
DPHE271
DHOH2474
DHOH2475

site_idHC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B1522
ChainResidue
BTHR11
BARG83
BGLU84
BTRP103
BTYR135
BASP246
BGLN247
BPHE271
BHOH2490
BHOH2491

site_idHC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B1523
ChainResidue
BSER219
BCYS221
BASN296
BASP297
BGLU453
BEDO1507
BHOH2263
BHOH2432
BHOH2492

site_idHC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C1522
ChainResidue
CCYS221
CASN296
CASP297
CGLU453
CEDO1507
CHOH2429
CHOH2491
CHOH2492

site_idHC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A1512
ChainResidue
AGLU114
AALA117

site_idHC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C1523
ChainResidue
CASN29
CLEU31
CASN56
CGLU60

site_idHC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C1524
ChainResidue
CTYR293
CLYS294
CPHE295
CASP299
CLYS300
CLYS302
CEDO1506
CHOH2313
CHOH2494

site_idHC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C1525
ChainResidue
BLYS477
BASP479
CLYS75
CVAL454
CLYS455
CHOH2495
CHOH2496
CHOH2497

site_idIC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C1526
ChainResidue
BLYS75
BVAL454
CASP479
CHOH2498

site_idIC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C1527
ChainResidue
CGLU200
CILE208
CMET211
CHOH2242
CHOH2253
CHOH2499

Functional Information from PROSITE/UniProt
site_idPS00445
Number of Residues21
DetailsFGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. AsIYGMtfnters.HIVRALLE
ChainResidueDetails
AALA364-GLU384

site_idPS00933
Number of Residues13
DetailsFGGY_KINASES_1 FGGY family of carbohydrate kinases signature 1. YfSafKILWLIQN
ChainResidueDetails
ATYR135-ASN147

250835

PDB entries from 2026-03-18

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