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2VP5

Structural Studies of Nucleoside Analog and Feedback Inhibitor Binding to Drosophila Melanogaster Multisubstrate Deoxyribonucleoside Kinase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004136molecular_functiondeoxyadenosine kinase activity
A0004137molecular_functiondeoxycytidine kinase activity
A0004138molecular_functiondeoxyguanosine kinase activity
A0004797molecular_functionthymidine kinase activity
A0004849molecular_functionuridine kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006139biological_processnucleobase-containing compound metabolic process
A0006170biological_processdAMP biosynthetic process
A0006222biological_processUMP biosynthetic process
A0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
A0009224biological_processCMP biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0019136molecular_functiondeoxynucleoside kinase activity
A0043174biological_processnucleoside salvage
A0043771molecular_functioncytidine kinase activity
A0071897biological_processDNA biosynthetic process
A1901293biological_processnucleoside phosphate biosynthetic process
B0000166molecular_functionnucleotide binding
B0004136molecular_functiondeoxyadenosine kinase activity
B0004137molecular_functiondeoxycytidine kinase activity
B0004138molecular_functiondeoxyguanosine kinase activity
B0004797molecular_functionthymidine kinase activity
B0004849molecular_functionuridine kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006139biological_processnucleobase-containing compound metabolic process
B0006170biological_processdAMP biosynthetic process
B0006222biological_processUMP biosynthetic process
B0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
B0009224biological_processCMP biosynthetic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
B0019136molecular_functiondeoxynucleoside kinase activity
B0043174biological_processnucleoside salvage
B0043771molecular_functioncytidine kinase activity
B0071897biological_processDNA biosynthetic process
B1901293biological_processnucleoside phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A1209
ChainResidue
AGLY30
ASER31
AGLY32
ALYS33
ATHR34
AARG167
AHOH2023

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B1209
ChainResidue
BSER31
BGLY32
BLYS33
BTHR34
BARG167
BHOH2064
BHOH2065
BASN28
BGLY30

site_idAC3
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DCZ A1210
ChainResidue
AILE29
AGLU52
ATRP57
ALEU66
AMET69
ATYR70
APHE80
AGLN81
AVAL84
AARG105
AALA110
APHE114
AGLU172
AHOH2011
AHOH2054
AHOH2055

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE DCZ B1210
ChainResidue
BILE29
BGLU52
BTRP57
BLEU66
BMET69
BTYR70
BPHE80
BGLN81
BVAL84
BARG105
BALA110
BPHE114
BARG169
BGLU172
BHOH2017
BHOH2029
BHOH2055

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255
ChainResidueDetails
AGLU104
BGLU104

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY27
BGLY27

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
AGLU52
BGLU172
ATYR70
AGLN81
AARG105
AGLU172
BGLU52
BTYR70
BGLN81
BARG105

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PDB entries from 2024-04-24

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