2VOT
Structural and biochemical evidence for a boat-like transition state in beta-mannosidases
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
A | 0004567 | molecular_function | beta-mannosidase activity |
A | 0005576 | cellular_component | extracellular region |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0006516 | biological_process | glycoprotein catabolic process |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
B | 0004567 | molecular_function | beta-mannosidase activity |
B | 0005576 | cellular_component | extracellular region |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0006516 | biological_process | glycoprotein catabolic process |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE NHV A1865 |
Chain | Residue |
A | TRP198 |
A | GLU555 |
A | TRP645 |
A | TRP656 |
A | EDO1878 |
A | HOH2533 |
A | ASP199 |
A | TRP200 |
A | TRP395 |
A | ASN461 |
A | GLU462 |
A | TRP470 |
A | TRP533 |
A | TYR537 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1866 |
Chain | Residue |
A | GLN365 |
A | ASN648 |
A | ASP649 |
A | ILE659 |
A | ASP660 |
A | HOH2259 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1867 |
Chain | Residue |
A | TRP525 |
A | SER530 |
A | ASN532 |
A | ASP548 |
A | MET553 |
A | HOH2368 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A1868 |
Chain | Residue |
A | ILE328 |
A | GLY329 |
A | ARG449 |
A | ASN450 |
A | HIS451 |
A | ALA452 |
A | ARG507 |
A | HOH2534 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1869 |
Chain | Residue |
A | ARG331 |
A | ARG507 |
A | HOH2534 |
A | HOH2535 |
A | HOH2536 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A1870 |
Chain | Residue |
A | GLU465 |
A | LYS468 |
A | TYR469 |
A | PRO514 |
A | LEU516 |
A | ALA517 |
A | ASN518 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1871 |
Chain | Residue |
A | ILE578 |
A | ARG597 |
A | PRO607 |
A | GLU608 |
A | PHE613 |
A | HOH2389 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1872 |
Chain | Residue |
A | ASN337 |
A | VAL510 |
A | TYR515 |
A | EDO1892 |
A | HOH2537 |
A | HOH2538 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1873 |
Chain | Residue |
A | GLN623 |
A | ARG626 |
A | PHE775 |
A | HOH2539 |
A | HOH2540 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1874 |
Chain | Residue |
A | ARG634 |
A | GLN686 |
A | TYR693 |
A | HOH2424 |
A | HOH2541 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1875 |
Chain | Residue |
A | VAL442 |
A | ARG446 |
A | HOH2314 |
A | HOH2542 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1876 |
Chain | Residue |
A | TYR824 |
A | SER825 |
A | ILE840 |
A | HOH2278 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1877 |
Chain | Residue |
A | SER43 |
A | GLN44 |
A | GLY46 |
A | THR47 |
A | GLU48 |
A | GLU90 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1878 |
Chain | Residue |
A | ASN178 |
A | TRP198 |
A | ASP199 |
A | CYS424 |
A | GLU462 |
A | NHV1865 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A1879 |
Chain | Residue |
A | GLU543 |
A | GLN623 |
A | GLY624 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1880 |
Chain | Residue |
A | ASP88 |
A | HIS157 |
A | ARG161 |
A | EDO1884 |
B | EDO1871 |
site_id | BC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1881 |
Chain | Residue |
A | HIS451 |
A | HOH2236 |
A | HOH2321 |
A | HIS326 |
A | ARG327 |
A | ASN450 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1882 |
Chain | Residue |
A | PRO212 |
A | ASN402 |
A | EDO1891 |
A | HOH2290 |
A | HOH2543 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1883 |
Chain | Residue |
A | SER43 |
A | GLN44 |
A | THR47 |
A | LYS49 |
A | MET51 |
A | LEU68 |
site_id | CC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A1884 |
Chain | Residue |
A | ARG161 |
A | GLN162 |
A | PRO165 |
A | EDO1880 |
B | ASP119 |
B | TYR121 |
B | TYR155 |
B | HIS157 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A1885 |
Chain | Residue |
A | TRP470 |
A | ASN518 |
A | TRP519 |
site_id | CC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE BR A1886 |
Chain | Residue |
A | ILE107 |
site_id | CC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE BR A1887 |
Chain | Residue |
A | HIS284 |
site_id | CC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR A1888 |
Chain | Residue |
A | GLN108 |
A | HOH2175 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR A1889 |
Chain | Residue |
A | GLN685 |
A | ASP688 |
site_id | CC8 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE NHV B1868 |
Chain | Residue |
B | TRP198 |
B | ASP199 |
B | TRP200 |
B | TRP395 |
B | ASN461 |
B | GLU462 |
B | TRP470 |
B | TRP533 |
B | TYR537 |
B | GLU555 |
B | TRP645 |
B | TRP656 |
B | EDO1877 |
B | EDO1879 |
site_id | CC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1869 |
Chain | Residue |
B | TRP525 |
B | SER530 |
B | ASN532 |
B | ASP548 |
B | PRO550 |
B | MET553 |
B | HOH2591 |
site_id | DC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1870 |
Chain | Residue |
B | ASN337 |
B | HIS511 |
B | TYR515 |
B | EDO1902 |
B | HOH2376 |
B | HOH2592 |
B | HOH2593 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1871 |
Chain | Residue |
A | EDO1880 |
B | ASP88 |
B | HIS157 |
B | GLN162 |
B | EDO1887 |
site_id | DC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B1872 |
Chain | Residue |
A | THR432 |
A | HOH2069 |
B | LEU126 |
B | HOH2086 |
site_id | DC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B1873 |
Chain | Residue |
B | SER43 |
B | GLN44 |
B | GLY46 |
B | THR47 |
B | GLU48 |
B | GLU90 |
site_id | DC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B1874 |
Chain | Residue |
B | ARG376 |
B | TYR661 |
site_id | DC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1875 |
Chain | Residue |
B | ARG331 |
B | ASP506 |
B | ARG507 |
B | HOH2269 |
B | HOH2594 |
site_id | DC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1876 |
Chain | Residue |
B | GLN365 |
B | ASN648 |
B | ASP649 |
B | ILE659 |
B | ASP660 |
site_id | DC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1877 |
Chain | Residue |
B | ASN178 |
B | ASP199 |
B | CYS424 |
B | GLU462 |
B | NHV1868 |
site_id | DC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B1878 |
Chain | Residue |
B | GLN623 |
B | ARG626 |
B | HIS774 |
B | PHE775 |
B | EDO1882 |
B | HOH2456 |
B | HOH2457 |
B | HOH2538 |
site_id | EC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B1879 |
Chain | Residue |
B | GLU465 |
B | TRP519 |
B | NHV1868 |
B | EDO1886 |
site_id | EC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B1880 |
Chain | Residue |
B | PHE356 |
B | ARG633 |
B | ARG636 |
B | ILE695 |
B | SER696 |
B | ASP697 |
B | ASN733 |
B | THR734 |
site_id | EC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1881 |
Chain | Residue |
B | ILE328 |
B | GLY329 |
B | ARG449 |
B | ASN450 |
B | HIS451 |
B | ALA452 |
B | ARG507 |
site_id | EC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B1882 |
Chain | Residue |
B | GLN685 |
B | PHE775 |
B | PHE776 |
B | ARG777 |
B | LYS778 |
B | EDO1878 |
B | CL1894 |
B | HOH2595 |
site_id | EC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B1883 |
Chain | Residue |
B | PHE42 |
B | SER43 |
B | GLN44 |
B | THR47 |
B | LYS49 |
B | LEU63 |
B | LEU68 |
B | HOH2014 |
site_id | EC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1884 |
Chain | Residue |
B | ASN300 |
B | TRP302 |
B | PHE356 |
B | ASN390 |
B | ASP697 |
B | HOH2286 |
B | HOH2513 |
site_id | EC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B1885 |
Chain | Residue |
B | ARG382 |
B | ARG823 |
B | SER825 |
B | ILE840 |
B | THR842 |
B | HOH2599 |
site_id | EC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1886 |
Chain | Residue |
B | GLU465 |
B | TRP470 |
B | ASN518 |
B | TRP519 |
B | EDO1879 |
site_id | EC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1887 |
Chain | Residue |
A | ASP119 |
A | TYR121 |
A | TYR155 |
B | ARG161 |
B | GLN162 |
B | PRO165 |
B | EDO1871 |
site_id | FC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1888 |
Chain | Residue |
B | HIS326 |
B | ARG327 |
B | ASN450 |
B | HIS451 |
B | HOH2264 |
B | HOH2353 |
B | HOH2596 |
site_id | FC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B1889 |
Chain | Residue |
B | ARG602 |
B | LYS778 |
B | HOH2597 |
site_id | FC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR B1890 |
Chain | Residue |
B | ILE107 |
B | LYS142 |
B | HOH2066 |
site_id | FC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR B1891 |
Chain | Residue |
B | GLN685 |
B | ASP688 |
site_id | FC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE BR B1892 |
Chain | Residue |
B | HOH2378 |
site_id | FC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL B1893 |
Chain | Residue |
B | GLN108 |
site_id | FC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL B1894 |
Chain | Residue |
B | ILE684 |
B | GLN685 |
B | HIS774 |
B | EDO1882 |
B | HOH2489 |
site_id | FC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1895 |
Chain | Residue |
B | TYR347 |
B | EDO1900 |
B | HOH2276 |
B | HOH2466 |
B | HOH2468 |
site_id | FC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B1896 |
Chain | Residue |
B | GLN230 |
B | HOH2185 |
B | HOH2190 |
site_id | GC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A1890 |
Chain | Residue |
A | ASN300 |
A | TRP302 |
A | PHE356 |
A | LYS358 |
A | ASN390 |
A | ASP697 |
A | HOH2258 |
A | HOH2474 |
site_id | GC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B1897 |
Chain | Residue |
B | TRP665 |
B | TYR670 |
B | ARG823 |
B | TYR824 |
B | HOH2480 |
B | HOH2599 |
site_id | GC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO B1898 |
Chain | Residue |
B | TYR194 |
B | GLY197 |
B | TRP198 |
B | TRP200 |
B | GLY201 |
B | ILE202 |
B | SER650 |
B | HOH2600 |
site_id | GC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B1899 |
Chain | Residue |
B | MET298 |
B | TRP302 |
B | ASN351 |
site_id | GC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A1891 |
Chain | Residue |
A | PRO370 |
A | VAL372 |
A | ASN402 |
A | LEU404 |
A | EDO1882 |
A | HOH2544 |
site_id | GC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1892 |
Chain | Residue |
A | ASN337 |
A | LYS339 |
A | GLU344 |
A | EDO1872 |
site_id | GC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1900 |
Chain | Residue |
B | ASP340 |
B | LYS341 |
B | ASP342 |
B | PRO637 |
B | EDO1895 |
site_id | GC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B1901 |
Chain | Residue |
B | ARG376 |
B | LEU380 |
B | ASP383 |
B | GLY663 |
B | HOH2288 |
B | HOH2602 |
site_id | GC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A1893 |
Chain | Residue |
A | GLU243 |
A | LEU244 |
A | ILE245 |
A | HIS284 |
A | ILE285 |
A | THR286 |
A | HOH2545 |
site_id | HC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B1902 |
Chain | Residue |
B | ASN337 |
B | LYS339 |
B | GLU344 |
B | EDO1870 |
B | HOH2603 |
site_id | HC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1894 |
Chain | Residue |
A | GLU708 |
A | LYS710 |
A | LYS758 |
A | ILE760 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1bgl |
Chain | Residue | Details |
A | GLU462 | |
A | GLU555 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1bgl |
Chain | Residue | Details |
B | GLU462 | |
B | GLU555 |