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2VK4

Crystal structure of pyruvate decarboxylase from Kluyveromyces lactis

Replaces:  2G1I
Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0000949biological_processaromatic amino acid family catabolic process to alcohol via Ehrlich pathway
A0003824molecular_functioncatalytic activity
A0004737molecular_functionpyruvate decarboxylase activity
A0005634cellular_componentnucleus
A0005829cellular_componentcytosol
A0016831molecular_functioncarboxy-lyase activity
A0030976molecular_functionthiamine pyrophosphate binding
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0000949biological_processaromatic amino acid family catabolic process to alcohol via Ehrlich pathway
B0003824molecular_functioncatalytic activity
B0004737molecular_functionpyruvate decarboxylase activity
B0005634cellular_componentnucleus
B0005829cellular_componentcytosol
B0016831molecular_functioncarboxy-lyase activity
B0030976molecular_functionthiamine pyrophosphate binding
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0000949biological_processaromatic amino acid family catabolic process to alcohol via Ehrlich pathway
C0003824molecular_functioncatalytic activity
C0004737molecular_functionpyruvate decarboxylase activity
C0005634cellular_componentnucleus
C0005829cellular_componentcytosol
C0016831molecular_functioncarboxy-lyase activity
C0030976molecular_functionthiamine pyrophosphate binding
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0000949biological_processaromatic amino acid family catabolic process to alcohol via Ehrlich pathway
D0003824molecular_functioncatalytic activity
D0004737molecular_functionpyruvate decarboxylase activity
D0005634cellular_componentnucleus
D0005829cellular_componentcytosol
D0016831molecular_functioncarboxy-lyase activity
D0030976molecular_functionthiamine pyrophosphate binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE TPP A 600
ChainResidue
AGLY389
AASN471
AGLY473
ATYR474
ATHR475
AILE476
AGLU477
AMG601
AHOH2238
AHOH2309
AHOH2310
ATHR390
BPRO26
BGLY27
BGLU51
BVAL76
AGLY413
ASER414
AILE415
AGLY443
AASP444
AGLY445
ASER446

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 601
ChainResidue
AASP444
AASN471
AGLY473
ATPP600
AHOH2238

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE TPP B 600
ChainResidue
APRO26
AGLY27
AGLU51
AVAL76
BGLY389
BTHR390
BGLY413
BSER414
BILE415
BGLY443
BASP444
BGLY445
BSER446
BASN471
BGLY473
BTYR474
BTHR475
BILE476
BGLU477
BMG601
BHOH2215
BHOH2256
BHOH2325
BHOH2326

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 601
ChainResidue
BASP444
BASN471
BGLY473
BTPP600
BHOH2256

site_idAC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE TPP C 600
ChainResidue
CTHR390
CGLY413
CSER414
CILE415
CGLY443
CASP444
CGLY445
CSER446
CASN471
CGLY473
CTYR474
CTHR475
CILE476
CGLU477
CMG601
CHOH2260
CHOH2374
CHOH2375
CHOH2376
DPRO26
DGLY27
DGLU51
DVAL76

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 601
ChainResidue
CASP444
CASN471
CGLY473
CTPP600
CHOH2374

site_idAC7
Number of Residues24
DetailsBINDING SITE FOR RESIDUE TPP D 600
ChainResidue
DGLY473
DTYR474
DTHR475
DILE476
DGLU477
DMG601
DHOH2196
DHOH2197
DHOH2237
DHOH2307
CPRO26
CGLY27
CGLU51
CVAL76
DGLY389
DTHR390
DGLY413
DSER414
DILE415
DGLY443
DASP444
DGLY445
DSER446
DASN471

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D 601
ChainResidue
DASP444
DASN471
DGLY473
DTPP600
DHOH2237

Functional Information from PROSITE/UniProt
site_idPS00187
Number of Residues20
DetailsTPP_ENZYMES Thiamine pyrophosphate enzymes signature. FAaeeidPkkrvIlFiGDGS
ChainResidueDetails
APHE427-SER446

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P06169
ChainResidueDetails
AASP28
BASP28
BHIS115
BTHR390
BGLY413
BASP444
BGLY445
BASN471
BGLY473
BGLU477
CASP28
AHIS115
CHIS115
CTHR390
CGLY413
CASP444
CGLY445
CASN471
CGLY473
CGLU477
DASP28
DHIS115
ATHR390
DTHR390
DGLY413
DASP444
DGLY445
DASN471
DGLY473
DGLU477
AGLY413
AASP444
AGLY445
AASN471
AGLY473
AGLU477

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
AASP28
AHIS114
AHIS115
AGLU477

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
BASP28
BHIS114
BHIS115
BGLU477

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
CASP28
CHIS114
CHIS115
CGLU477

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
DASP28
DHIS114
DHIS115
DGLU477

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PDB entries from 2024-11-20

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