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2VIG

Crystal structure of human short-chain acyl CoA dehydrogenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003995molecular_functionacyl-CoA dehydrogenase activity
A0004085molecular_functionbutyryl-CoA dehydrogenase activity
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0005813cellular_componentcentrosome
A0006631biological_processfatty acid metabolic process
A0006635biological_processfatty acid beta-oxidation
A0016491molecular_functionoxidoreductase activity
A0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
A0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
A0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
A0046359biological_processbutyrate catabolic process
A0050660molecular_functionflavin adenine dinucleotide binding
B0003995molecular_functionacyl-CoA dehydrogenase activity
B0004085molecular_functionbutyryl-CoA dehydrogenase activity
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005739cellular_componentmitochondrion
B0005759cellular_componentmitochondrial matrix
B0005813cellular_componentcentrosome
B0006631biological_processfatty acid metabolic process
B0006635biological_processfatty acid beta-oxidation
B0016491molecular_functionoxidoreductase activity
B0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
B0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
B0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
B0046359biological_processbutyrate catabolic process
B0050660molecular_functionflavin adenine dinucleotide binding
C0003995molecular_functionacyl-CoA dehydrogenase activity
C0004085molecular_functionbutyryl-CoA dehydrogenase activity
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005739cellular_componentmitochondrion
C0005759cellular_componentmitochondrial matrix
C0005813cellular_componentcentrosome
C0006631biological_processfatty acid metabolic process
C0006635biological_processfatty acid beta-oxidation
C0016491molecular_functionoxidoreductase activity
C0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
C0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
C0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
C0046359biological_processbutyrate catabolic process
C0050660molecular_functionflavin adenine dinucleotide binding
D0003995molecular_functionacyl-CoA dehydrogenase activity
D0004085molecular_functionbutyryl-CoA dehydrogenase activity
D0005634cellular_componentnucleus
D0005654cellular_componentnucleoplasm
D0005739cellular_componentmitochondrion
D0005759cellular_componentmitochondrial matrix
D0005813cellular_componentcentrosome
D0006631biological_processfatty acid metabolic process
D0006635biological_processfatty acid beta-oxidation
D0016491molecular_functionoxidoreductase activity
D0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
D0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
D0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
D0046359biological_processbutyrate catabolic process
D0050660molecular_functionflavin adenine dinucleotide binding
E0003995molecular_functionacyl-CoA dehydrogenase activity
E0004085molecular_functionbutyryl-CoA dehydrogenase activity
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005739cellular_componentmitochondrion
E0005759cellular_componentmitochondrial matrix
E0005813cellular_componentcentrosome
E0006631biological_processfatty acid metabolic process
E0006635biological_processfatty acid beta-oxidation
E0016491molecular_functionoxidoreductase activity
E0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
E0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
E0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
E0046359biological_processbutyrate catabolic process
E0050660molecular_functionflavin adenine dinucleotide binding
F0003995molecular_functionacyl-CoA dehydrogenase activity
F0004085molecular_functionbutyryl-CoA dehydrogenase activity
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005739cellular_componentmitochondrion
F0005759cellular_componentmitochondrial matrix
F0005813cellular_componentcentrosome
F0006631biological_processfatty acid metabolic process
F0006635biological_processfatty acid beta-oxidation
F0016491molecular_functionoxidoreductase activity
F0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
F0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
F0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
F0046359biological_processbutyrate catabolic process
F0050660molecular_functionflavin adenine dinucleotide binding
G0003995molecular_functionacyl-CoA dehydrogenase activity
G0004085molecular_functionbutyryl-CoA dehydrogenase activity
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005739cellular_componentmitochondrion
G0005759cellular_componentmitochondrial matrix
G0005813cellular_componentcentrosome
G0006631biological_processfatty acid metabolic process
G0006635biological_processfatty acid beta-oxidation
G0016491molecular_functionoxidoreductase activity
G0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
G0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
G0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
G0046359biological_processbutyrate catabolic process
G0050660molecular_functionflavin adenine dinucleotide binding
H0003995molecular_functionacyl-CoA dehydrogenase activity
H0004085molecular_functionbutyryl-CoA dehydrogenase activity
H0005634cellular_componentnucleus
H0005654cellular_componentnucleoplasm
H0005739cellular_componentmitochondrion
H0005759cellular_componentmitochondrial matrix
H0005813cellular_componentcentrosome
H0006631biological_processfatty acid metabolic process
H0006635biological_processfatty acid beta-oxidation
H0016491molecular_functionoxidoreductase activity
H0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
H0016937molecular_functionshort-chain fatty acyl-CoA dehydrogenase activity
H0033539biological_processfatty acid beta-oxidation using acyl-CoA dehydrogenase
H0046359biological_processbutyrate catabolic process
H0050660molecular_functionflavin adenine dinucleotide binding
Functional Information from PDB Data
site_idAC1
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD A 600
ChainResidue
APHE152
ATYR391
AGLU392
ATHR394
AGLU396
ALEU400
AHOH711
AHOH630
AHOH683
AHOH633
AHOH639
ALEU154
AHOH669
BARG297
BPHE300
BLEU304
BLEU307
BGLN365
BILE366
BGLY369
BHOH608
CGLN308
ASER155
AGLY160
ASER161
ATRP185
ATHR187
ALYS230
AILE387

site_idAC2
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD B 600
ChainResidue
AARG297
APHE300
ALEU304
ALEU307
AGLN365
AILE366
AGLY369
AHOH603
BPHE152
BLEU154
BSER155
BGLY160
BSER161
BTRP185
BTHR187
BLYS230
BILE387
BILE390
BTYR391
BGLU392
BTHR394
BGLU396
BCOS502
BHOH676
BHOH634
BHOH681
BHOH675
BHOH669
DGLN308

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE COS B 605
ChainResidue
APHE300
BGLY160
BSER161
BPHE261
BMET265
BGLN266
BLEU268
BASP269
BARG272
BILE342
BGLU392
BGLY393
BILE397
BFAD501
BHOH656
BHOH646
BHOH631

site_idAC4
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD C 600
ChainResidue
DPHE300
DLEU304
DLEU307
DGLN365
DILE366
DGLY369
DHOH650
AGLN308
CPHE152
CLEU154
CSER155
CGLY160
CSER161
CTRP185
CTHR187
CLYS230
CILE387
CILE390
CTYR391
CGLU392
CTHR394
CGLU396
CLEU400
CCOS502
CHOH653
CHOH649
CHOH625
CHOH633
CHOH651
CHOH671
DARG297

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE COS C 605
ChainResidue
CSER155
CGLY160
CSER161
CLEU268
CARG272
CGLU392
CGLY393
CILE397
CFAD501

site_idAC6
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD D 600
ChainResidue
BGLN308
CARG297
CPHE300
CLEU304
CLEU307
CVAL309
CGLN365
CILE366
CGLY369
CHOH604
DPHE152
DLEU154
DSER155
DGLY160
DSER161
DTRP185
DILE186
DTHR187
DLYS230
DILE387
DTYR391
DGLU392
DTHR394
DGLU396
DLEU400
DCOS502
DHOH652
DHOH645
DHOH671
DHOH657
DHOH619

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE COS D 605
ChainResidue
DSER155
DGLY160
DSER161
DLEU268
DARG272
DGLU392
DGLY393
DFAD501

site_idAC8
Number of Residues30
DetailsBINDING SITE FOR RESIDUE FAD E 600
ChainResidue
EPHE152
ELEU154
ESER155
EGLY160
ESER161
ETRP185
ETHR187
ELYS230
EILE390
ETYR391
EGLU392
ETHR394
EGLU396
ELEU400
EHOH685
EHOH688
EHOH616
EHOH646
EHOH707
EHOH655
FARG297
FPHE300
FLEU304
FLEU307
FVAL309
FGLN365
FILE366
FGLY369
FHOH604
GGLN308

site_idAC9
Number of Residues28
DetailsBINDING SITE FOR RESIDUE FAD F 600
ChainResidue
EARG297
EPHE300
ELEU304
ELEU307
EVAL309
EGLN365
EILE366
EGLY369
EHOH613
FPHE152
FLEU154
FSER155
FGLY160
FSER161
FTRP185
FTHR187
FLYS230
FTYR391
FGLU392
FTHR394
FGLU396
FCOS502
FHOH654
FHOH656
FHOH647
FHOH652
FHOH630
HGLN308

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE COS F 605
ChainResidue
FSER155
FGLY160
FSER161
FLEU268
FARG272
FGLU392
FGLY393
FFAD501
FHOH610

site_idBC2
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD G 600
ChainResidue
EGLN308
GPHE152
GLEU154
GSER155
GGLY160
GSER161
GTRP185
GILE186
GTHR187
GLYS230
GILE387
GILE390
GTYR391
GGLU392
GTHR394
GGLU396
GLEU400
GCOS502
GHOH637
GHOH662
GHOH689
GHOH674
GHOH630
HARG297
HPHE300
HLEU304
HLEU307
HGLN365
HILE366
HGLY369
HHOH644

site_idBC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE COS G 605
ChainResidue
GGLY160
GSER161
GALA163
GASN207
GPHE261
GMET265
GGLN266
GLEU268
GASP269
GARG272
GILE342
GGLU392
GGLY393
GVAL401
GFAD501
GHOH672
GHOH642
GHOH601
GHOH660
HPHE300

site_idBC4
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD H 600
ChainResidue
FGLN308
GARG297
GPHE300
GLEU307
GGLN365
GILE366
GGLY369
GHOH611
HPHE152
HLEU154
HSER155
HGLY160
HSER161
HTRP185
HILE186
HTHR187
HLYS230
HILE387
HILE390
HTYR391
HGLU392
HTHR394
HGLU396
HLEU400
HHOH669
HHOH695
HHOH647
HHOH614
HHOH610

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F1414
ChainResidue
FGLN59
FPRO67
FGLN70
FHOH699
FHOH704

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO D1414
ChainResidue
DPRO67
DGLN70

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E1414
ChainResidue
ELEU65
EPRO67
EGLN70
EHOH680

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO H1414
ChainResidue
HGLN59
HLEU65
HPRO67
HGLN70
HHOH635

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B1412
ChainResidue
BGLN59
BPRO67
BGLN70

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1415
ChainResidue
BARG330
DGLU322
DARG325
DLEU326
DHOH702

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A1413
ChainResidue
AGLU322
AARG325
ALEU326
CARG330

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO E1415
ChainResidue
EGLU322
EARG325
ELEU326
GARG330
EHOH633
EHOH700

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO H1415
ChainResidue
FARG330
HGLU322
HARG325
HLEU326
HHOH700

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E1416
ChainResidue
EGLU156
EPRO157
ESER167
EGLY181
ETHR182
EHOH706
EHOH689

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F1415
ChainResidue
DGLU134
FGLU134
FGLN135
FTRP139
FHOH702

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO F1416
ChainResidue
FGLU156
FSER167
FTHR168
FGLY181
FTHR182
FHOH693

Functional Information from PROSITE/UniProt
site_idPS00072
Number of Residues13
DetailsACYL_COA_DH_1 Acyl-CoA dehydrogenases signature 1. ALSEpgNGSDagA
ChainResidueDetails
AALA153-ALA165

site_idPS00073
Number of Residues20
DetailsACYL_COA_DH_2 Acyl-CoA dehydrogenases signature 2. QiLGGmGYvtEmpaeRhyrD
ChainResidueDetails
AGLN365-ASP384

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P15651
ChainResidueDetails
AGLU392
BGLU392
CGLU392
DGLU392
EGLU392
FGLU392
GGLU392
HGLU392

site_idSWS_FT_FI2
Number of Residues32
DetailsBINDING: in other chain => ECO:0000269|Ref.10
ChainResidueDetails
APHE152
CTRP185
CGLN308
CTHR394
DPHE152
DTRP185
DGLN308
DTHR394
EPHE152
ETRP185
EGLN308
ATRP185
ETHR394
FPHE152
FTRP185
FGLN308
FTHR394
GPHE152
GTRP185
GGLN308
GTHR394
HPHE152
AGLN308
HTRP185
HGLN308
HTHR394
ATHR394
BPHE152
BTRP185
BGLN308
BTHR394
CPHE152

site_idSWS_FT_FI3
Number of Residues24
DetailsBINDING:
ChainResidueDetails
ASER161
DSER161
DASP269
DGLY393
ESER161
EASP269
EGLY393
FSER161
FASP269
FGLY393
GSER161
AASP269
GASP269
GGLY393
HSER161
HASP269
HGLY393
AGLY393
BSER161
BASP269
BGLY393
CSER161
CASP269
CGLY393

site_idSWS_FT_FI4
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|Ref.10
ChainResidueDetails
AARG297
EGLN365
FARG297
FGLN365
GARG297
GGLN365
HARG297
HGLN365
AGLN365
BARG297
BGLN365
CARG297
CGLN365
DARG297
DGLN365
EARG297

site_idSWS_FT_FI5
Number of Residues32
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q07417
ChainResidueDetails
ALYS51
CLYS129
CLYS262
CLYS306
DLYS51
DLYS129
DLYS262
DLYS306
ELYS51
ELYS129
ELYS262
ALYS129
ELYS306
FLYS51
FLYS129
FLYS262
FLYS306
GLYS51
GLYS129
GLYS262
GLYS306
HLYS51
ALYS262
HLYS129
HLYS262
HLYS306
ALYS306
BLYS51
BLYS129
BLYS262
BLYS306
CLYS51

site_idSWS_FT_FI6
Number of Residues16
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q07417
ChainResidueDetails
ALYS72
ELYS208
FLYS72
FLYS208
GLYS72
GLYS208
HLYS72
HLYS208
ALYS208
BLYS72
BLYS208
CLYS72
CLYS208
DLYS72
DLYS208
ELYS72

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
AGLY271

site_idCSA10
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
BGLU392

site_idCSA11
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
CGLU392

site_idCSA12
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
DGLU392

site_idCSA13
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
EGLU392

site_idCSA14
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
FGLU392

site_idCSA15
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
GGLU392

site_idCSA16
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
HGLU392

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
BGLY271

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
CGLY271

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
DGLY271

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
EGLY271

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
FGLY271

site_idCSA7
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
GGLY271

site_idCSA8
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
HGLY271

site_idCSA9
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ivh
ChainResidueDetails
AGLU392

222036

PDB entries from 2024-07-03

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