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2VGN

Structure of S. cerevisiae Dom34, a translation termination-like factor involved in RNA quality control pathways and interacting with Hbs1 (SelenoMet-labeled protein)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004521molecular_functionRNA endonuclease activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0006417biological_processregulation of translation
A0010467biological_processgene expression
A0016070biological_processRNA metabolic process
A0032790biological_processribosome disassembly
A0043022molecular_functionribosome binding
A0045727biological_processpositive regulation of translation
A0045948biological_processpositive regulation of translational initiation
A0046872molecular_functionmetal ion binding
A0051301biological_processcell division
A0051321biological_processmeiotic cell cycle
A0070481biological_processnuclear-transcribed mRNA catabolic process, non-stop decay
A0070651biological_processnonfunctional rRNA decay
A0070966biological_processnuclear-transcribed mRNA catabolic process, no-go decay
A0071025biological_processRNA surveillance
A0072344biological_processrescue of stalled ribosome
A1990533cellular_componentDom34-Hbs1 complex
B0004521molecular_functionRNA endonuclease activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006412biological_processtranslation
B0006417biological_processregulation of translation
B0010467biological_processgene expression
B0016070biological_processRNA metabolic process
B0032790biological_processribosome disassembly
B0043022molecular_functionribosome binding
B0045727biological_processpositive regulation of translation
B0045948biological_processpositive regulation of translational initiation
B0046872molecular_functionmetal ion binding
B0051301biological_processcell division
B0051321biological_processmeiotic cell cycle
B0070481biological_processnuclear-transcribed mRNA catabolic process, non-stop decay
B0070651biological_processnonfunctional rRNA decay
B0070966biological_processnuclear-transcribed mRNA catabolic process, no-go decay
B0071025biological_processRNA surveillance
B0072344biological_processrescue of stalled ribosome
B1990533cellular_componentDom34-Hbs1 complex
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B1382
ChainResidue
BGLU40
BVAL88
BTHR89

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B1383
ChainResidue
BVAL351
BPHE125
BLYS128
BMSE339
BGLU343
BALA349
BLEU350

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B1384
ChainResidue
BLYS8
BLYS293
BASP295
BLYS297

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PDB entries from 2024-10-16

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