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2VEL

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Functional Information from GO Data
ChainGOidnamespacecontents
A0004807molecular_functiontriose-phosphate isomerase activity
A0005737cellular_componentcytoplasm
A0005777cellular_componentperoxisome
A0005829cellular_componentcytosol
A0006094biological_processgluconeogenesis
A0006096biological_processglycolytic process
A0016853molecular_functionisomerase activity
A0019563biological_processglycerol catabolic process
A0020015cellular_componentglycosome
A0046166biological_processglyceraldehyde-3-phosphate biosynthetic process
B0004807molecular_functiontriose-phosphate isomerase activity
B0005737cellular_componentcytoplasm
B0005777cellular_componentperoxisome
B0005829cellular_componentcytosol
B0006094biological_processgluconeogenesis
B0006096biological_processglycolytic process
B0016853molecular_functionisomerase activity
B0019563biological_processglycerol catabolic process
B0020015cellular_componentglycosome
B0046166biological_processglyceraldehyde-3-phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A1251
ChainResidue
AASN34
AHIS35

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B1251
ChainResidue
AARG98
ATYR102
BARG98
BTYR102

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PGA B1252
ChainResidue
BGLU167
BALA171
BILE172
BGLY173
BSER213
BLEU232
BALA233
BGLY234
BLYS239
BHOH2176
BHOH2192
BASN11
BLYS13
BHIS95

site_idAC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PGA A1252
ChainResidue
AASN11
ALYS13
AHIS95
AGLU167
AALA171
AILE172
AGLY173
AGLY212
ASER213
AGLY234
AHOH2160
AHOH2161

Functional Information from PROSITE/UniProt
site_idPS00171
Number of Residues11
DetailsTIM_1 Triosephosphate isomerase active site. AYEPVWAIGTG
ChainResidueDetails
AALA165-GLY175

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Electrophile
ChainResidueDetails
AHIS95
BHIS95

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AGLU167
BGLU167

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASN11
ALYS13
BASN11
BLYS13

218500

PDB entries from 2024-04-17

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