2VD9
The crystal structure of alanine racemase from Bacillus anthracis (BA0252) with bound L-Ala-P
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005829 | cellular_component | cytosol |
| A | 0006522 | biological_process | alanine metabolic process |
| A | 0008784 | molecular_function | alanine racemase activity |
| A | 0009252 | biological_process | peptidoglycan biosynthetic process |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| A | 0030632 | biological_process | D-alanine biosynthetic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005829 | cellular_component | cytosol |
| B | 0006522 | biological_process | alanine metabolic process |
| B | 0008784 | molecular_function | alanine racemase activity |
| B | 0009252 | biological_process | peptidoglycan biosynthetic process |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0030632 | biological_process | D-alanine biosynthetic process |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MG B 1390 |
| Chain | Residue |
| B | GLU155 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG A 1390 |
| Chain | Residue |
| A | MLY333 |
| A | HOH2167 |
| A | HOH2336 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MG A 1391 |
| Chain | Residue |
| A | ILE263 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1392 |
| Chain | Residue |
| A | ASN131 |
| A | ARG138 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 1391 |
| Chain | Residue |
| B | ASN131 |
| B | ARG138 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 1393 |
| Chain | Residue |
| A | ARG144 |
| A | PHE215 |
| A | GLN216 |
| A | HOH2183 |
| A | HOH2259 |
| site_id | AC7 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE IN5 B 1392 |
| Chain | Residue |
| A | TYR270 |
| A | THR316 |
| A | MET317 |
| B | LYS41 |
| B | TYR45 |
| B | ARG138 |
| B | HIS168 |
| B | ASN208 |
| B | SER209 |
| B | ARG224 |
| B | GLY226 |
| B | ILE227 |
| B | TYR359 |
| B | HOH2443 |
| B | HOH2444 |
| B | HOH2445 |
| B | HOH2446 |
| B | HOH2447 |
| site_id | AC8 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE IN5 A 1394 |
| Chain | Residue |
| A | VAL39 |
| A | LYS41 |
| A | TYR45 |
| A | ARG138 |
| A | HIS168 |
| A | ASN208 |
| A | SER209 |
| A | ARG224 |
| A | GLY226 |
| A | ILE227 |
| A | TYR359 |
| A | HOH2421 |
| A | HOH2422 |
| A | HOH2423 |
| A | HOH2424 |
| B | TYR270 |
| B | TYR289 |
| B | THR316 |
| B | MET317 |
| B | ASP318 |
| B | HOH2318 |
| site_id | AC9 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE EPC B 1393 |
| Chain | Residue |
| A | TYR270 |
| A | TYR289 |
| A | THR316 |
| A | MET317 |
| B | LYS41 |
| B | TYR45 |
| B | ARG138 |
| B | HIS168 |
| B | ASN208 |
| B | SER209 |
| B | ARG224 |
| B | GLY226 |
| B | ILE227 |
| B | TYR359 |
| B | HOH2443 |
| B | HOH2444 |
| B | HOH2445 |
| B | HOH2446 |
| B | HOH2447 |
| site_id | BC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE EPC A 1395 |
| Chain | Residue |
| A | LYS41 |
| A | TYR45 |
| A | ARG138 |
| A | HIS168 |
| A | ASN208 |
| A | SER209 |
| A | ARG224 |
| A | GLY226 |
| A | ILE227 |
| A | TYR359 |
| A | HOH2421 |
| A | HOH2422 |
| A | HOH2423 |
| A | HOH2424 |
| B | TYR270 |
| B | TYR289 |
| B | THR316 |
| B | MET317 |
| B | ASP318 |
Functional Information from PROSITE/UniProt
| site_id | PS00395 |
| Number of Residues | 11 |
| Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKGNAYGHD |
| Chain | Residue | Details |
| A | ALA38-ASP48 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| A | ARG138 | |
| A | LYS41 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| B | ARG138 | |
| B | LYS41 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| A | THR316 | |
| A | TYR270 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| B | THR316 | |
| B | TYR270 |
