2VD8
The crystal structure of alanine racemase from Bacillus anthracis (BA0252)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005829 | cellular_component | cytosol |
| A | 0006522 | biological_process | alanine metabolic process |
| A | 0008784 | molecular_function | alanine racemase activity |
| A | 0009252 | biological_process | peptidoglycan biosynthetic process |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| A | 0030632 | biological_process | D-alanine biosynthetic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005829 | cellular_component | cytosol |
| B | 0006522 | biological_process | alanine metabolic process |
| B | 0008784 | molecular_function | alanine racemase activity |
| B | 0009252 | biological_process | peptidoglycan biosynthetic process |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0030632 | biological_process | D-alanine biosynthetic process |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE PLP A 1041 |
| Chain | Residue |
| A | LYS41 |
| A | TYR359 |
| A | HOH2075 |
| A | HOH2076 |
| A | HOH2337 |
| A | TYR45 |
| A | ARG138 |
| A | HIS168 |
| A | ASN208 |
| A | SER209 |
| A | ARG224 |
| A | GLY226 |
| A | ILE227 |
| site_id | AC2 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE PLP B 1041 |
| Chain | Residue |
| A | HOH2410 |
| B | LYS41 |
| B | TYR45 |
| B | ARG138 |
| B | HIS168 |
| B | ASN208 |
| B | SER209 |
| B | ARG224 |
| B | GLY226 |
| B | ILE227 |
| B | TYR359 |
| B | HOH2059 |
| B | HOH2060 |
| B | HOH2270 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 1001 |
| Chain | Residue |
| A | GLU161 |
| A | HOH2271 |
| A | HOH2273 |
| A | HOH2274 |
| B | HOH2218 |
| B | HOH2221 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 1002 |
| Chain | Residue |
| A | HOH2455 |
| B | GLY306 |
| B | ASP342 |
| B | GLU343 |
| B | HOH2406 |
| B | HOH2410 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 1003 |
| Chain | Residue |
| A | HOH2158 |
| A | HOH2159 |
| A | HOH2160 |
| A | HOH2404 |
| A | HOH2405 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1390 |
| Chain | Residue |
| A | ASP17 |
| A | HOH2033 |
| A | HOH2034 |
| A | HOH2035 |
| A | HOH2539 |
| B | HOH2388 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 1391 |
| Chain | Residue |
| A | ARG144 |
| A | GLN216 |
| A | HOH2247 |
| A | HOH2249 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1392 |
| Chain | Residue |
| A | ASN131 |
| A | ARG138 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 1390 |
| Chain | Residue |
| B | ASN131 |
| B | ARG138 |
Functional Information from PROSITE/UniProt
| site_id | PS00395 |
| Number of Residues | 11 |
| Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKGNAYGHD |
| Chain | Residue | Details |
| A | ALA38-ASP48 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| A | ARG138 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| B | ARG138 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| A | THR316 | |
| A | TYR270 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1bd0 |
| Chain | Residue | Details |
| B | THR316 | |
| B | TYR270 |
