2VBU
Riboflavin kinase Mj0056 from Methanocaldococcus jannaschii in complex with CDP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0008531 | molecular_function | riboflavin kinase activity |
| A | 0009231 | biological_process | riboflavin biosynthetic process |
| A | 0009398 | biological_process | FMN biosynthetic process |
| A | 0016301 | molecular_function | kinase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
| A | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE CDP A1133 |
| Chain | Residue |
| A | GLY14 |
| A | LEU44 |
| A | ASN45 |
| A | MET112 |
| A | LYS113 |
| A | LEU114 |
| A | ARG115 |
| A | MG1134 |
| A | HOH2058 |
| A | HOH2145 |
| A | HOH2146 |
| A | LEU15 |
| A | HOH2147 |
| A | HOH2148 |
| A | HOH2149 |
| A | HOH2150 |
| A | GLY16 |
| A | GLU17 |
| A | GLY18 |
| A | ARG19 |
| A | TYR40 |
| A | GLY42 |
| A | THR43 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG A1134 |
| Chain | Residue |
| A | THR43 |
| A | ASN45 |
| A | CDP1133 |
| A | HOH2146 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MRD A1135 |
| Chain | Residue |
| A | GLU17 |
| A | TYR20 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MRD A1136 |
| Chain | Residue |
| A | LEU22 |
| A | TYR27 |
| A | VAL94 |
| A | PRO96 |
| A | GLU107 |
| A | HOH2151 |
| A | HOH2152 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MRD A1137 |
| Chain | Residue |
| A | LEU4 |
| A | ILE80 |
| A | LEU129 |
| A | LYS131 |
| A | HOH2098 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"MAR-2007","submissionDatabase":"PDB data bank","title":"Crystal structure of hypothetical protein from Methanococcus jannaschii bound to CDP.","authoringGroup":["New York structural genomics research consortium (NYSGRC)"]}}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"18073108","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | Binding site: {} |
| Chain | Residue | Details |
