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2V9X

E138D variant of Escherichia coli dCTP deaminase in complex with dUTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005829cellular_componentcytosol
A0006226biological_processdUMP biosynthetic process
A0006229biological_processdUTP biosynthetic process
A0006235biological_processdTTP biosynthetic process
A0008829molecular_functiondCTP deaminase activity
A0009117biological_processnucleotide metabolic process
A0009314biological_processresponse to radiation
A0015949biological_processnucleobase-containing small molecule interconversion
A0016787molecular_functionhydrolase activity
A0032991cellular_componentprotein-containing complex
A0042802molecular_functionidentical protein binding
A0070207biological_processprotein homotrimerization
B0000166molecular_functionnucleotide binding
B0005829cellular_componentcytosol
B0006226biological_processdUMP biosynthetic process
B0006229biological_processdUTP biosynthetic process
B0006235biological_processdTTP biosynthetic process
B0008829molecular_functiondCTP deaminase activity
B0009117biological_processnucleotide metabolic process
B0009314biological_processresponse to radiation
B0015949biological_processnucleobase-containing small molecule interconversion
B0016787molecular_functionhydrolase activity
B0032991cellular_componentprotein-containing complex
B0042802molecular_functionidentical protein binding
B0070207biological_processprotein homotrimerization
C0000166molecular_functionnucleotide binding
C0005829cellular_componentcytosol
C0006226biological_processdUMP biosynthetic process
C0006229biological_processdUTP biosynthetic process
C0006235biological_processdTTP biosynthetic process
C0008829molecular_functiondCTP deaminase activity
C0009117biological_processnucleotide metabolic process
C0009314biological_processresponse to radiation
C0015949biological_processnucleobase-containing small molecule interconversion
C0016787molecular_functionhydrolase activity
C0032991cellular_componentprotein-containing complex
C0042802molecular_functionidentical protein binding
C0070207biological_processprotein homotrimerization
D0000166molecular_functionnucleotide binding
D0005829cellular_componentcytosol
D0006226biological_processdUMP biosynthetic process
D0006229biological_processdUTP biosynthetic process
D0006235biological_processdTTP biosynthetic process
D0008829molecular_functiondCTP deaminase activity
D0009117biological_processnucleotide metabolic process
D0009314biological_processresponse to radiation
D0015949biological_processnucleobase-containing small molecule interconversion
D0016787molecular_functionhydrolase activity
D0032991cellular_componentprotein-containing complex
D0042802molecular_functionidentical protein binding
D0070207biological_processprotein homotrimerization
E0000166molecular_functionnucleotide binding
E0005829cellular_componentcytosol
E0006226biological_processdUMP biosynthetic process
E0006229biological_processdUTP biosynthetic process
E0006235biological_processdTTP biosynthetic process
E0008829molecular_functiondCTP deaminase activity
E0009117biological_processnucleotide metabolic process
E0009314biological_processresponse to radiation
E0015949biological_processnucleobase-containing small molecule interconversion
E0016787molecular_functionhydrolase activity
E0032991cellular_componentprotein-containing complex
E0042802molecular_functionidentical protein binding
E0070207biological_processprotein homotrimerization
F0000166molecular_functionnucleotide binding
F0005829cellular_componentcytosol
F0006226biological_processdUMP biosynthetic process
F0006229biological_processdUTP biosynthetic process
F0006235biological_processdTTP biosynthetic process
F0008829molecular_functiondCTP deaminase activity
F0009117biological_processnucleotide metabolic process
F0009314biological_processresponse to radiation
F0015949biological_processnucleobase-containing small molecule interconversion
F0016787molecular_functionhydrolase activity
F0032991cellular_componentprotein-containing complex
F0042802molecular_functionidentical protein binding
F0070207biological_processprotein homotrimerization
G0000166molecular_functionnucleotide binding
G0005829cellular_componentcytosol
G0006226biological_processdUMP biosynthetic process
G0006229biological_processdUTP biosynthetic process
G0006235biological_processdTTP biosynthetic process
G0008829molecular_functiondCTP deaminase activity
G0009117biological_processnucleotide metabolic process
G0009314biological_processresponse to radiation
G0015949biological_processnucleobase-containing small molecule interconversion
G0016787molecular_functionhydrolase activity
G0032991cellular_componentprotein-containing complex
G0042802molecular_functionidentical protein binding
G0070207biological_processprotein homotrimerization
H0000166molecular_functionnucleotide binding
H0005829cellular_componentcytosol
H0006226biological_processdUMP biosynthetic process
H0006229biological_processdUTP biosynthetic process
H0006235biological_processdTTP biosynthetic process
H0008829molecular_functiondCTP deaminase activity
H0009117biological_processnucleotide metabolic process
H0009314biological_processresponse to radiation
H0015949biological_processnucleobase-containing small molecule interconversion
H0016787molecular_functionhydrolase activity
H0032991cellular_componentprotein-containing complex
H0042802molecular_functionidentical protein binding
H0070207biological_processprotein homotrimerization
I0000166molecular_functionnucleotide binding
I0005829cellular_componentcytosol
I0006226biological_processdUMP biosynthetic process
I0006229biological_processdUTP biosynthetic process
I0006235biological_processdTTP biosynthetic process
I0008829molecular_functiondCTP deaminase activity
I0009117biological_processnucleotide metabolic process
I0009314biological_processresponse to radiation
I0015949biological_processnucleobase-containing small molecule interconversion
I0016787molecular_functionhydrolase activity
I0032991cellular_componentprotein-containing complex
I0042802molecular_functionidentical protein binding
I0070207biological_processprotein homotrimerization
J0000166molecular_functionnucleotide binding
J0005829cellular_componentcytosol
J0006226biological_processdUMP biosynthetic process
J0006229biological_processdUTP biosynthetic process
J0006235biological_processdTTP biosynthetic process
J0008829molecular_functiondCTP deaminase activity
J0009117biological_processnucleotide metabolic process
J0009314biological_processresponse to radiation
J0015949biological_processnucleobase-containing small molecule interconversion
J0016787molecular_functionhydrolase activity
J0032991cellular_componentprotein-containing complex
J0042802molecular_functionidentical protein binding
J0070207biological_processprotein homotrimerization
K0000166molecular_functionnucleotide binding
K0005829cellular_componentcytosol
K0006226biological_processdUMP biosynthetic process
K0006229biological_processdUTP biosynthetic process
K0006235biological_processdTTP biosynthetic process
K0008829molecular_functiondCTP deaminase activity
K0009117biological_processnucleotide metabolic process
K0009314biological_processresponse to radiation
K0015949biological_processnucleobase-containing small molecule interconversion
K0016787molecular_functionhydrolase activity
K0032991cellular_componentprotein-containing complex
K0042802molecular_functionidentical protein binding
K0070207biological_processprotein homotrimerization
L0000166molecular_functionnucleotide binding
L0005829cellular_componentcytosol
L0006226biological_processdUMP biosynthetic process
L0006229biological_processdUTP biosynthetic process
L0006235biological_processdTTP biosynthetic process
L0008829molecular_functiondCTP deaminase activity
L0009117biological_processnucleotide metabolic process
L0009314biological_processresponse to radiation
L0015949biological_processnucleobase-containing small molecule interconversion
L0016787molecular_functionhydrolase activity
L0032991cellular_componentprotein-containing complex
L0042802molecular_functionidentical protein binding
L0070207biological_processprotein homotrimerization
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DUT A1194
ChainResidue
AALA124
ALYS178
ATYR179
AGLN182
AMG1195
AHOH2039
AHOH2044
CARG110
CSER111
CSER112
CARG115
AARG126
CHOH2035
CHOH2036
AASP128
ATRP131
AILE135
AVAL136
ATYR171
AARG174
AALA177

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DUT B1194
ChainResidue
AARG110
ASER111
ASER112
AARG115
AHOH2023
BALA124
BARG126
BASP128
BTRP131
BILE135
BVAL136
BTYR171
BARG174
BALA177
BLYS178
BGLN182
BMG1195
BHOH2045
BHOH2046
BHOH2047
BHOH2048

site_idAC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DUT C1194
ChainResidue
BARG110
BSER111
BSER112
BARG115
BHOH2009
BHOH2025
BHOH2026
CALA124
CARG126
CASP128
CTRP131
CILE135
CVAL136
CTYR171
CARG174
CALA177
CLYS178
CTYR179
CGLN182
CMG1195
CHOH2052
CHOH2053
CHOH2054

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE DUT J1194
ChainResidue
JALA124
JARG126
JASP128
JTRP131
JILE135
JVAL136
JTYR171
JMG1195
JHOH2030
JHOH2031
JHOH2032
LARG110
LSER111
LSER112
LHOH2002

site_idAC5
Number of Residues22
DetailsBINDING SITE FOR RESIDUE DUT K1194
ChainResidue
KMG1195
KHOH2022
KHOH2037
JARG110
JSER111
JSER112
JARG115
JHOH2010
JHOH2011
JHOH2021
KALA124
KARG126
KASP128
KTRP131
KILE135
KVAL136
KTYR171
KARG174
KALA177
KLYS178
KTYR179
KGLN182

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DUT L1194
ChainResidue
KARG110
KSER111
KSER112
KARG115
KHOH2006
KHOH2019
LALA124
LARG126
LASP128
LTRP131
LILE135
LVAL136
LTYR171
LMG1195
LHOH2017
LHOH2025

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE DUT D1194
ChainResidue
DALA124
DARG126
DASP128
DTRP131
DILE135
DVAL136
DTYR171
DARG174
DLYS178
DTYR179
DGLN182
DMG1195
DHOH2027
DHOH2035
DHOH2036
FARG110
FSER111
FSER112
FARG115
FHOH2019

site_idAC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DUT E1194
ChainResidue
DARG110
DSER111
DSER112
DARG115
DHOH2007
DHOH2021
EALA124
EARG126
EASP128
EILE135
EVAL136
ETYR171
EARG174
EALA177
ELYS178
ETYR179
EGLN182
EMG1195
EHOH2038
EHOH2039
EHOH2040

site_idAC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DUT F1194
ChainResidue
EARG110
ESER111
ESER112
EARG115
EHOH2007
EHOH2008
FALA124
FARG126
FASP128
FTRP131
FILE135
FVAL136
FTYR171
FARG174
FALA177
FLYS178
FTYR179
FGLN182
FMG1195
FHOH2032
FHOH2033

site_idBC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE DUT I1194
ChainResidue
HARG110
HSER111
HSER112
HARG115
HHOH2027
IALA124
IARG126
IASP128
IILE135
IVAL136
ITYR171
IARG174
IALA177
ILYS178
ITYR179
IGLN182
IMG1195
IHOH2026
IHOH2040
IHOH2041

site_idBC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DUT G1194
ChainResidue
GALA124
GARG126
GASP128
GTRP131
GILE135
GVAL136
GTYR171
GARG174
GLYS178
GTYR179
GGLN182
GMG1195
GHOH2025
IARG110
ISER111
ISER112
IARG115
IHOH2004
IHOH2021

site_idBC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DUT H1194
ChainResidue
GARG110
GSER111
GSER112
GARG115
GHOH2002
GHOH2012
GHOH2013
HALA124
HARG126
HASP128
HTRP131
HILE135
HVAL136
HTYR171
HARG174
HALA177
HLYS178
HTYR179
HGLN182
HMG1195
HHOH2043
HHOH2044
HHOH2045

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A1195
ChainResidue
ADUT1194
CHOH2011

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B1195
ChainResidue
AHOH2009
BDUT1194
BHOH2045

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG C1195
ChainResidue
BHOH2009
CDUT1194
CHOH2052

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG D1195
ChainResidue
DDUT1194
DHOH2035

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG E1195
ChainResidue
DHOH2007
EDUT1194
EHOH2039

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG F1195
ChainResidue
EHOH2007
EHOH2008
FDUT1194
FHOH2032

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G1195
ChainResidue
GDUT1194
IHOH2004

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG H1195
ChainResidue
GHOH2002
HDUT1194
HHOH2044

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG I1195
ChainResidue
IDUT1194
IHOH2040

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG J1195
ChainResidue
JDUT1194
LHOH2002

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG K1195
ChainResidue
JHOH2010
JHOH2011
KDUT1194
KHOH2037

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG L1195
ChainResidue
KHOH2006
LDUT1194

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C1197
ChainResidue
AARG2
AHIS125
BARG2
BHIS125
CARG2
CHIS125

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 K1197
ChainResidue
KLEU107
KASP108
KHIS121
KHIS125
LTHR123
LHIS125

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G1197
ChainResidue
GARG2
GHIS125
HARG2
HHIS125
IARG2
IHIS125

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 D1197
ChainResidue
DARG2
DHIS125
EARG2
EHIS125
FARG2
FHIS125

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00146, ECO:0000305|PubMed:15539408, ECO:0000305|PubMed:17996716
ChainResidueDetails
AASP138
JASP138
KASP138
LASP138
BASP138
CASP138
DASP138
EASP138
FASP138
GASP138
HASP138
IASP138

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00146, ECO:0000305|PubMed:15539408, ECO:0000305|PubMed:17651436, ECO:0000305|PubMed:17996716
ChainResidueDetails
AARG110
EVAL136
FARG110
FVAL136
GARG110
GVAL136
HARG110
HVAL136
IARG110
IVAL136
JARG110
AVAL136
JVAL136
KARG110
KVAL136
LARG110
LVAL136
BARG110
BVAL136
CARG110
CVAL136
DARG110
DVAL136
EARG110

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:15539408, ECO:0000305|PubMed:17651436, ECO:0000305|PubMed:17996716
ChainResidueDetails
AALA124
JALA124
KALA124
LALA124
BALA124
CALA124
DALA124
EALA124
FALA124
GALA124
HALA124
IALA124

site_idSWS_FT_FI4
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:15539408, ECO:0000305|PubMed:17996716
ChainResidueDetails
ATYR171
JTYR171
KTYR171
LTYR171
BTYR171
CTYR171
DTYR171
ETYR171
FTYR171
GTYR171
HTYR171
ITYR171

site_idSWS_FT_FI5
Number of Residues24
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00146, ECO:0000305|PubMed:15539408, ECO:0000305|PubMed:17996716
ChainResidueDetails
ALYS178
EGLN182
FLYS178
FGLN182
GLYS178
GGLN182
HLYS178
HGLN182
ILYS178
IGLN182
JLYS178
AGLN182
JGLN182
KLYS178
KGLN182
LLYS178
LGLN182
BLYS178
BGLN182
CLYS178
CGLN182
DLYS178
DGLN182
ELYS178

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
AGLY130
AASP128

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
JGLY130
JASP128

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
KGLY130
KASP128

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
LGLY130
LASP128

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
BGLY130
BASP128

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
CGLY130
CASP128

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
DGLY130
DASP128

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
EGLY130
EASP128

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
FGLY130
FASP128

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
GGLY130
GASP128

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
HGLY130
HASP128

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
IGLY130
IASP128

site_idMCSA1
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
ASER111electrostatic stabiliser
AARG115electrostatic stabiliser
AALA124electrostatic stabiliser
AARG126steric role
AASP138proton acceptor, proton donor

site_idMCSA10
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
JSER111electrostatic stabiliser
JARG115electrostatic stabiliser
JALA124electrostatic stabiliser
JARG126steric role
JASP138proton acceptor, proton donor

site_idMCSA11
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
KSER111electrostatic stabiliser
KARG115electrostatic stabiliser
KALA124electrostatic stabiliser
KARG126steric role
KASP138proton acceptor, proton donor

site_idMCSA12
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
LSER111electrostatic stabiliser
LARG115electrostatic stabiliser
LALA124electrostatic stabiliser
LARG126steric role
LASP138proton acceptor, proton donor

site_idMCSA2
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
BSER111electrostatic stabiliser
BARG115electrostatic stabiliser
BALA124electrostatic stabiliser
BARG126steric role
BASP138proton acceptor, proton donor

site_idMCSA3
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
CSER111electrostatic stabiliser
CARG115electrostatic stabiliser
CALA124electrostatic stabiliser
CARG126steric role
CASP138proton acceptor, proton donor

site_idMCSA4
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
DSER111electrostatic stabiliser
DARG115electrostatic stabiliser
DALA124electrostatic stabiliser
DARG126steric role
DASP138proton acceptor, proton donor

site_idMCSA5
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
ESER111electrostatic stabiliser
EARG115electrostatic stabiliser
EALA124electrostatic stabiliser
EARG126steric role
EASP138proton acceptor, proton donor

site_idMCSA6
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
FSER111electrostatic stabiliser
FARG115electrostatic stabiliser
FALA124electrostatic stabiliser
FARG126steric role
FASP138proton acceptor, proton donor

site_idMCSA7
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
GSER111electrostatic stabiliser
GARG115electrostatic stabiliser
GALA124electrostatic stabiliser
GARG126steric role
GASP138proton acceptor, proton donor

site_idMCSA8
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
HSER111electrostatic stabiliser
HARG115electrostatic stabiliser
HALA124electrostatic stabiliser
HARG126steric role
HASP138proton acceptor, proton donor

site_idMCSA9
Number of Residues5
DetailsM-CSA 732
ChainResidueDetails
ISER111electrostatic stabiliser
IARG115electrostatic stabiliser
IALA124electrostatic stabiliser
IARG126steric role
IASP138proton acceptor, proton donor

227561

PDB entries from 2024-11-20

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