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2V9W

Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A1345
ChainResidue
AASP7
APHE8
AASP105
ADCT1347

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A1346
ChainResidue
AASP7
AASP105
AGLU106
ADCT1347
CDG13

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B1344
ChainResidue
BASP7
BPHE8
BASP105
BDCT1346

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B1345
ChainResidue
BASP7
BASP105
BGLU106
BDCT1346
BHOH2011
EDG13

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE DCT A1347
ChainResidue
AASP7
APHE8
AASP9
ATYR10
ATHR45
ATYR48
AARG51
AASP105
ALYS159
ACA1345
ACA1346
AHOH2059
CDG13
DDG5

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE DCT B1346
ChainResidue
BASP7
BPHE8
BTYR10
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BASP105
BLYS159
BCA1344
BCA1345
BHOH2005
BHOH2048
EDG13
FDG5

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

219140

PDB entries from 2024-05-01

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