2V9D
Crystal Structure of YagE, a prophage protein belonging to the dihydrodipicolinic acid synthase family from E. coli K12
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0016829 | molecular_function | lyase activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046176 | biological_process | aldonic acid catabolic process |
| A | 0047440 | molecular_function | 2-dehydro-3-deoxy-D-pentonate aldolase activity |
| A | 0061677 | molecular_function | 2-dehydro-3-deoxy-D-gluconate aldolase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0016829 | molecular_function | lyase activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046176 | biological_process | aldonic acid catabolic process |
| B | 0047440 | molecular_function | 2-dehydro-3-deoxy-D-pentonate aldolase activity |
| B | 0061677 | molecular_function | 2-dehydro-3-deoxy-D-gluconate aldolase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0016829 | molecular_function | lyase activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0046176 | biological_process | aldonic acid catabolic process |
| C | 0047440 | molecular_function | 2-dehydro-3-deoxy-D-pentonate aldolase activity |
| C | 0061677 | molecular_function | 2-dehydro-3-deoxy-D-gluconate aldolase activity |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0016829 | molecular_function | lyase activity |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0046176 | biological_process | aldonic acid catabolic process |
| D | 0047440 | molecular_function | 2-dehydro-3-deoxy-D-pentonate aldolase activity |
| D | 0061677 | molecular_function | 2-dehydro-3-deoxy-D-gluconate aldolase activity |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | Active site: {"description":"Charge relay system","evidences":[{"source":"PubMed","id":"21294156","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"21294156","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Schiff-base intermediate with substrate","evidences":[{"source":"PubMed","id":"21294156","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1fdy |
| Chain | Residue | Details |
| A | SER56 | |
| A | LYS174 | |
| A | GLY57 |
| site_id | CSA2 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1fdy |
| Chain | Residue | Details |
| B | SER56 | |
| B | LYS174 | |
| B | GLY57 |
| site_id | CSA3 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1fdy |
| Chain | Residue | Details |
| C | SER56 | |
| C | LYS174 | |
| C | GLY57 |
| site_id | CSA4 |
| Number of Residues | 3 |
| Details | Annotated By Reference To The Literature 1fdy |
| Chain | Residue | Details |
| D | SER56 | |
| D | LYS174 | |
| D | GLY57 |
