2V69
Crystal structure of Chlamydomonas reinhardtii Rubisco with a large- subunit mutation D473E
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004497 | molecular_function | monooxygenase activity |
A | 0009507 | cellular_component | chloroplast |
A | 0009853 | biological_process | photorespiration |
A | 0015977 | biological_process | carbon fixation |
A | 0015979 | biological_process | photosynthesis |
A | 0016829 | molecular_function | lyase activity |
A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
A | 0019253 | biological_process | reductive pentose-phosphate cycle |
A | 0046872 | molecular_function | metal ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0004497 | molecular_function | monooxygenase activity |
B | 0009507 | cellular_component | chloroplast |
B | 0009853 | biological_process | photorespiration |
B | 0015977 | biological_process | carbon fixation |
B | 0015979 | biological_process | photosynthesis |
B | 0016829 | molecular_function | lyase activity |
B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
B | 0019253 | biological_process | reductive pentose-phosphate cycle |
B | 0046872 | molecular_function | metal ion binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0004497 | molecular_function | monooxygenase activity |
C | 0009507 | cellular_component | chloroplast |
C | 0009853 | biological_process | photorespiration |
C | 0015977 | biological_process | carbon fixation |
C | 0015979 | biological_process | photosynthesis |
C | 0016829 | molecular_function | lyase activity |
C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
C | 0019253 | biological_process | reductive pentose-phosphate cycle |
C | 0046872 | molecular_function | metal ion binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0004497 | molecular_function | monooxygenase activity |
D | 0009507 | cellular_component | chloroplast |
D | 0009853 | biological_process | photorespiration |
D | 0015977 | biological_process | carbon fixation |
D | 0015979 | biological_process | photosynthesis |
D | 0016829 | molecular_function | lyase activity |
D | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
D | 0019253 | biological_process | reductive pentose-phosphate cycle |
D | 0046872 | molecular_function | metal ion binding |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0004497 | molecular_function | monooxygenase activity |
E | 0009507 | cellular_component | chloroplast |
E | 0009853 | biological_process | photorespiration |
E | 0015977 | biological_process | carbon fixation |
E | 0015979 | biological_process | photosynthesis |
E | 0016829 | molecular_function | lyase activity |
E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
E | 0019253 | biological_process | reductive pentose-phosphate cycle |
E | 0046872 | molecular_function | metal ion binding |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0004497 | molecular_function | monooxygenase activity |
F | 0009507 | cellular_component | chloroplast |
F | 0009853 | biological_process | photorespiration |
F | 0015977 | biological_process | carbon fixation |
F | 0015979 | biological_process | photosynthesis |
F | 0016829 | molecular_function | lyase activity |
F | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
F | 0019253 | biological_process | reductive pentose-phosphate cycle |
F | 0046872 | molecular_function | metal ion binding |
G | 0000287 | molecular_function | magnesium ion binding |
G | 0004497 | molecular_function | monooxygenase activity |
G | 0009507 | cellular_component | chloroplast |
G | 0009853 | biological_process | photorespiration |
G | 0015977 | biological_process | carbon fixation |
G | 0015979 | biological_process | photosynthesis |
G | 0016829 | molecular_function | lyase activity |
G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
G | 0019253 | biological_process | reductive pentose-phosphate cycle |
G | 0046872 | molecular_function | metal ion binding |
H | 0000287 | molecular_function | magnesium ion binding |
H | 0004497 | molecular_function | monooxygenase activity |
H | 0009507 | cellular_component | chloroplast |
H | 0009853 | biological_process | photorespiration |
H | 0015977 | biological_process | carbon fixation |
H | 0015979 | biological_process | photosynthesis |
H | 0016829 | molecular_function | lyase activity |
H | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
H | 0019253 | biological_process | reductive pentose-phosphate cycle |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A1470 |
Chain | Residue |
A | LYS177 |
A | KCX201 |
A | ASP203 |
A | GLU204 |
A | CAP1471 |
site_id | AC2 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE CAP A1471 |
Chain | Residue |
A | ASP203 |
A | GLU204 |
A | HIS294 |
A | ARG295 |
A | HIS327 |
A | LYS334 |
A | LEU335 |
A | SER379 |
A | GLY380 |
A | GLY381 |
A | GLY403 |
A | GLY404 |
A | HOH1049 |
A | HOH1050 |
A | MG1470 |
B | GLU60 |
B | THR65 |
B | TRP66 |
B | ASN123 |
A | THR173 |
A | LYS175 |
A | LYS177 |
A | KCX201 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B1470 |
Chain | Residue |
B | LYS177 |
B | KCX201 |
B | ASP203 |
B | GLU204 |
B | CAP1471 |
site_id | AC4 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE CAP B1471 |
Chain | Residue |
A | GLU60 |
A | THR65 |
A | TRP66 |
A | ASN123 |
B | THR173 |
B | LYS175 |
B | LYS177 |
B | KCX201 |
B | ASP203 |
B | GLU204 |
B | HIS294 |
B | ARG295 |
B | HIS327 |
B | LYS334 |
B | LEU335 |
B | SER379 |
B | GLY380 |
B | GLY381 |
B | GLY403 |
B | GLY404 |
B | HOH1029 |
B | MG1470 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C1471 |
Chain | Residue |
C | LYS177 |
C | KCX201 |
C | ASP203 |
C | GLU204 |
C | CAP1472 |
site_id | AC6 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE CAP C1472 |
Chain | Residue |
C | THR173 |
C | LYS175 |
C | LYS177 |
C | KCX201 |
C | ASP203 |
C | GLU204 |
C | HIS294 |
C | ARG295 |
C | HIS327 |
C | LYS334 |
C | LEU335 |
C | SER379 |
C | GLY380 |
C | GLY381 |
C | GLY403 |
C | GLY404 |
C | HOH1051 |
C | HOH1056 |
C | MG1471 |
D | GLU60 |
D | THR65 |
D | TRP66 |
D | ASN123 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG D1475 |
Chain | Residue |
D | LYS177 |
D | KCX201 |
D | ASP203 |
D | GLU204 |
D | CAP1476 |
site_id | AC8 |
Number of Residues | 25 |
Details | BINDING SITE FOR RESIDUE CAP D1476 |
Chain | Residue |
D | HIS294 |
D | ARG295 |
D | HIS327 |
D | LYS334 |
D | LEU335 |
D | SER379 |
D | GLY380 |
D | GLY381 |
D | GLY403 |
D | GLY404 |
D | HOH1029 |
D | HOH1035 |
D | HOH1036 |
D | MG1475 |
C | GLU60 |
C | THR65 |
C | TRP66 |
C | ASN123 |
C | HOH1015 |
D | THR173 |
D | LYS175 |
D | LYS177 |
D | KCX201 |
D | ASP203 |
D | GLU204 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG E1470 |
Chain | Residue |
E | LYS177 |
E | KCX201 |
E | ASP203 |
E | GLU204 |
E | CAP1471 |
site_id | BC1 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE CAP E1471 |
Chain | Residue |
E | THR173 |
E | LYS175 |
E | LYS177 |
E | KCX201 |
E | ASP203 |
E | GLU204 |
E | HIS294 |
E | ARG295 |
E | HIS327 |
E | LYS334 |
E | LEU335 |
E | SER379 |
E | GLY380 |
E | GLY381 |
E | GLY403 |
E | GLY404 |
E | HOH1048 |
E | HOH1049 |
E | MG1470 |
F | GLU60 |
F | THR65 |
F | TRP66 |
F | ASN123 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG F1470 |
Chain | Residue |
F | LYS177 |
F | KCX201 |
F | ASP203 |
F | GLU204 |
F | CAP1471 |
site_id | BC3 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE CAP F1471 |
Chain | Residue |
E | GLU60 |
E | THR65 |
E | TRP66 |
E | ASN123 |
F | THR173 |
F | LYS175 |
F | LYS177 |
F | KCX201 |
F | ASP203 |
F | GLU204 |
F | HIS294 |
F | ARG295 |
F | HIS327 |
F | LYS334 |
F | LEU335 |
F | SER379 |
F | GLY380 |
F | GLY381 |
F | GLY403 |
F | GLY404 |
F | HOH1039 |
F | HOH1040 |
F | MG1470 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG G1470 |
Chain | Residue |
G | LYS177 |
G | KCX201 |
G | ASP203 |
G | GLU204 |
G | CAP1471 |
site_id | BC5 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE CAP G1471 |
Chain | Residue |
G | THR173 |
G | LYS175 |
G | LYS177 |
G | KCX201 |
G | ASP203 |
G | GLU204 |
G | HIS294 |
G | ARG295 |
G | HIS327 |
G | LYS334 |
G | LEU335 |
G | SER379 |
G | GLY380 |
G | GLY381 |
G | GLY403 |
G | GLY404 |
G | HOH1035 |
G | HOH1041 |
G | MG1470 |
H | GLU60 |
H | THR65 |
H | TRP66 |
H | ASN123 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG H1470 |
Chain | Residue |
H | LYS177 |
H | KCX201 |
H | ASP203 |
H | GLU204 |
H | CAP1471 |
site_id | BC7 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE CAP H1471 |
Chain | Residue |
G | GLU60 |
G | THR65 |
G | TRP66 |
G | ASN123 |
H | THR173 |
H | LYS175 |
H | LYS177 |
H | KCX201 |
H | ASP203 |
H | GLU204 |
H | HIS294 |
H | ARG295 |
H | HIS327 |
H | LYS334 |
H | LEU335 |
H | SER379 |
H | GLY380 |
H | GLY381 |
H | GLY403 |
H | GLY404 |
H | HOH1040 |
H | MG1470 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A1472 |
Chain | Residue |
A | LYS18 |
A | ASP19 |
A | TRP66 |
A | THR67 |
A | THR68 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1473 |
Chain | Residue |
A | LYS466 |
A | PHE467 |
A | GLU468 |
A | PHE469 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO C1473 |
Chain | Residue |
C | TYR24 |
C | THR68 |
C | VAL69 |
C | ASP72 |
C | HOH1057 |
C | EDO1474 |
site_id | CC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO C1474 |
Chain | Residue |
C | LYS18 |
C | TYR20 |
C | THR65 |
C | TRP66 |
C | THR67 |
C | THR68 |
C | HOH1057 |
C | EDO1473 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO C1475 |
Chain | Residue |
C | ARG295 |
C | GLU336 |
C | HOH1043 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO E1472 |
Chain | Residue |
E | TYR24 |
E | THR68 |
E | VAL69 |
E | ASP72 |
E | HOH1053 |
site_id | CC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO E1473 |
Chain | Residue |
E | LYS18 |
E | TYR20 |
E | THR65 |
E | TRP66 |
E | THR67 |
E | THR68 |
E | HOH1002 |
site_id | CC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO E1474 |
Chain | Residue |
E | GLU52 |
site_id | CC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO G1472 |
Chain | Residue |
G | TYR24 |
G | THR68 |
G | VAL69 |
G | ASP72 |
site_id | CC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO G1473 |
Chain | Residue |
G | LYS18 |
G | ASP19 |
G | TYR20 |
G | THR65 |
G | TRP66 |
G | THR67 |
G | THR68 |
site_id | CC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO E1475 |
Chain | Residue |
E | LEU270 |
E | HOH1054 |
F | LEU270 |
F | HOH1028 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A1474 |
Chain | Residue |
A | LEU270 |
A | HOH1051 |
A | HOH1052 |
B | LEU270 |
site_id | DC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO H1472 |
Chain | Residue |
G | LEU270 |
H | LEU270 |
H | HOH1041 |
H | HOH1042 |
site_id | DC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B1472 |
Chain | Residue |
B | TYR24 |
B | GLY64 |
B | THR68 |
B | VAL69 |
B | ASP72 |
B | EDO1473 |
site_id | DC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B1473 |
Chain | Residue |
B | LYS18 |
B | TYR20 |
B | THR65 |
B | TRP66 |
B | THR67 |
B | THR68 |
B | EDO1472 |
site_id | DC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO H1473 |
Chain | Residue |
H | TYR24 |
H | GLY64 |
H | THR68 |
H | VAL69 |
H | ASP72 |
H | HOH1043 |
H | EDO1474 |
site_id | DC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H1474 |
Chain | Residue |
H | LYS18 |
H | ASP19 |
H | TRP66 |
H | THR67 |
H | THR68 |
H | EDO1473 |
site_id | DC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO H1475 |
Chain | Residue |
H | LYS466 |
H | PHE467 |
H | GLU468 |
site_id | DC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO F1472 |
Chain | Residue |
F | TYR24 |
F | THR68 |
F | VAL69 |
F | ASP72 |
F | LEU77 |
F | HOH1041 |
F | EDO1473 |
site_id | DC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO F1473 |
Chain | Residue |
F | LYS18 |
F | ASP19 |
F | THR65 |
F | TRP66 |
F | THR67 |
F | THR68 |
F | EDO1472 |
site_id | EC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO D1477 |
Chain | Residue |
D | TYR24 |
D | GLY64 |
D | THR68 |
D | VAL69 |
D | ASP72 |
D | HOH1002 |
site_id | EC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO D1478 |
Chain | Residue |
D | LYS18 |
D | ASP19 |
D | THR65 |
D | TRP66 |
D | THR67 |
D | THR68 |
site_id | EC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D1479 |
Chain | Residue |
C | LEU270 |
C | THR271 |
D | LEU270 |
D | GLY273 |
D | PHE274 |
site_id | EC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO G1474 |
Chain | Residue |
E | ASP286 |
E | ASN287 |
E | HOH1039 |
G | ARG215 |
G | LYS252 |
G | SMC256 |
M | VAL63 |
Functional Information from PROSITE/UniProt
site_id | PS00157 |
Number of Residues | 9 |
Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE |
Chain | Residue | Details |
A | GLY196-GLU204 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | MOD_RES: N-methylmethionine => ECO:0000269|PubMed:11641402 |
Chain | Residue | Details |
I | MME1 | |
J | MME1 | |
K | MME1 | |
L | MME1 | |
M | MME1 | |
N | MME1 | |
O | MME1 | |
P | MME1 | |
E | LYS175 | |
E | HIS294 | |
F | LYS175 | |
F | HIS294 | |
G | LYS175 | |
G | HIS294 | |
H | LYS175 | |
H | HIS294 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | BINDING: in homodimeric partner |
Chain | Residue | Details |
A | ASN123 | |
B | ASN123 | |
C | ASN123 | |
D | ASN123 | |
E | ASN123 | |
F | ASN123 | |
G | ASN123 | |
H | ASN123 |
site_id | SWS_FT_FI3 |
Number of Residues | 40 |
Details | BINDING: |
Chain | Residue | Details |
D | LYS177 | |
D | ARG295 | |
D | HIS327 | |
D | SER379 | |
E | THR173 | |
E | LYS177 | |
E | ARG295 | |
E | HIS327 | |
E | SER379 | |
F | THR173 | |
F | LYS177 | |
F | ARG295 | |
F | HIS327 | |
F | SER379 | |
G | THR173 | |
G | LYS177 | |
G | ARG295 | |
G | HIS327 | |
G | SER379 | |
H | THR173 | |
H | LYS177 | |
H | ARG295 | |
H | HIS327 | |
H | SER379 | |
A | THR173 | |
A | LYS177 | |
A | ARG295 | |
A | HIS327 | |
A | SER379 | |
B | THR173 | |
B | LYS177 | |
B | ARG295 | |
B | HIS327 | |
B | SER379 | |
C | THR173 | |
C | LYS177 | |
C | ARG295 | |
C | HIS327 | |
C | SER379 | |
D | THR173 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | BINDING: via carbamate group => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526 |
Chain | Residue | Details |
A | KCX201 | |
B | KCX201 | |
C | KCX201 | |
D | KCX201 | |
E | KCX201 | |
F | KCX201 | |
G | KCX201 | |
H | KCX201 |
site_id | SWS_FT_FI5 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526 |
Chain | Residue | Details |
A | ASP203 | |
A | GLU204 | |
B | ASP203 | |
B | GLU204 | |
C | ASP203 | |
C | GLU204 | |
D | ASP203 | |
D | GLU204 | |
E | ASP203 | |
E | GLU204 | |
F | ASP203 | |
F | GLU204 | |
G | ASP203 | |
G | GLU204 | |
H | ASP203 | |
H | GLU204 |
site_id | SWS_FT_FI6 |
Number of Residues | 8 |
Details | SITE: Transition state stabilizer |
Chain | Residue | Details |
A | LYS334 | |
B | LYS334 | |
C | LYS334 | |
D | LYS334 | |
E | LYS334 | |
F | LYS334 | |
G | LYS334 | |
H | LYS334 |
site_id | SWS_FT_FI7 |
Number of Residues | 8 |
Details | MOD_RES: N-acetylproline => ECO:0000269|PubMed:16668742 |
Chain | Residue | Details |
A | PRO3 | |
B | PRO3 | |
C | PRO3 | |
D | PRO3 | |
E | PRO3 | |
F | PRO3 | |
G | PRO3 | |
H | PRO3 |
site_id | SWS_FT_FI8 |
Number of Residues | 16 |
Details | MOD_RES: 4-hydroxyproline => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526 |
Chain | Residue | Details |
A | HYP104 | |
A | HYP151 | |
B | HYP104 | |
B | HYP151 | |
C | HYP104 | |
C | HYP151 | |
D | HYP104 | |
D | HYP151 | |
E | HYP104 | |
E | HYP151 | |
F | HYP104 | |
F | HYP151 | |
G | HYP104 | |
G | HYP151 | |
H | HYP104 | |
H | HYP151 |
site_id | SWS_FT_FI9 |
Number of Residues | 8 |
Details | MOD_RES: N6-carboxylysine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526, ECO:0000269|PubMed:6302265 |
Chain | Residue | Details |
A | KCX201 | |
B | KCX201 | |
C | KCX201 | |
D | KCX201 | |
E | KCX201 | |
F | KCX201 | |
G | KCX201 | |
H | KCX201 |
site_id | SWS_FT_FI10 |
Number of Residues | 16 |
Details | MOD_RES: S-methylcysteine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526 |
Chain | Residue | Details |
A | SMC256 | |
A | SMC369 | |
B | SMC256 | |
B | SMC369 | |
C | SMC256 | |
C | SMC369 | |
D | SMC256 | |
D | SMC369 | |
E | SMC256 | |
E | SMC369 | |
F | SMC256 | |
F | SMC369 | |
G | SMC256 | |
G | SMC369 | |
H | SMC256 | |
H | SMC369 |