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2V69

Crystal structure of Chlamydomonas reinhardtii Rubisco with a large- subunit mutation D473E

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0009507cellular_componentchloroplast
A0009853biological_processphotorespiration
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0009507cellular_componentchloroplast
B0009853biological_processphotorespiration
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0009507cellular_componentchloroplast
C0009853biological_processphotorespiration
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0009507cellular_componentchloroplast
D0009853biological_processphotorespiration
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0009507cellular_componentchloroplast
E0009853biological_processphotorespiration
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0009507cellular_componentchloroplast
F0009853biological_processphotorespiration
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0009507cellular_componentchloroplast
G0009853biological_processphotorespiration
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0009507cellular_componentchloroplast
H0009853biological_processphotorespiration
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A1470
ChainResidue
ALYS177
AKCX201
AASP203
AGLU204
ACAP1471

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CAP A1471
ChainResidue
AASP203
AGLU204
AHIS294
AARG295
AHIS327
ALYS334
ALEU335
ASER379
AGLY380
AGLY381
AGLY403
AGLY404
AHOH1049
AHOH1050
AMG1470
BGLU60
BTHR65
BTRP66
BASN123
ATHR173
ALYS175
ALYS177
AKCX201

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B1470
ChainResidue
BLYS177
BKCX201
BASP203
BGLU204
BCAP1471

site_idAC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE CAP B1471
ChainResidue
AGLU60
ATHR65
ATRP66
AASN123
BTHR173
BLYS175
BLYS177
BKCX201
BASP203
BGLU204
BHIS294
BARG295
BHIS327
BLYS334
BLEU335
BSER379
BGLY380
BGLY381
BGLY403
BGLY404
BHOH1029
BMG1470

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C1471
ChainResidue
CLYS177
CKCX201
CASP203
CGLU204
CCAP1472

site_idAC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CAP C1472
ChainResidue
CTHR173
CLYS175
CLYS177
CKCX201
CASP203
CGLU204
CHIS294
CARG295
CHIS327
CLYS334
CLEU335
CSER379
CGLY380
CGLY381
CGLY403
CGLY404
CHOH1051
CHOH1056
CMG1471
DGLU60
DTHR65
DTRP66
DASN123

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D1475
ChainResidue
DLYS177
DKCX201
DASP203
DGLU204
DCAP1476

site_idAC8
Number of Residues25
DetailsBINDING SITE FOR RESIDUE CAP D1476
ChainResidue
DHIS294
DARG295
DHIS327
DLYS334
DLEU335
DSER379
DGLY380
DGLY381
DGLY403
DGLY404
DHOH1029
DHOH1035
DHOH1036
DMG1475
CGLU60
CTHR65
CTRP66
CASN123
CHOH1015
DTHR173
DLYS175
DLYS177
DKCX201
DASP203
DGLU204

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG E1470
ChainResidue
ELYS177
EKCX201
EASP203
EGLU204
ECAP1471

site_idBC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CAP E1471
ChainResidue
ETHR173
ELYS175
ELYS177
EKCX201
EASP203
EGLU204
EHIS294
EARG295
EHIS327
ELYS334
ELEU335
ESER379
EGLY380
EGLY381
EGLY403
EGLY404
EHOH1048
EHOH1049
EMG1470
FGLU60
FTHR65
FTRP66
FASN123

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG F1470
ChainResidue
FLYS177
FKCX201
FASP203
FGLU204
FCAP1471

site_idBC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CAP F1471
ChainResidue
EGLU60
ETHR65
ETRP66
EASN123
FTHR173
FLYS175
FLYS177
FKCX201
FASP203
FGLU204
FHIS294
FARG295
FHIS327
FLYS334
FLEU335
FSER379
FGLY380
FGLY381
FGLY403
FGLY404
FHOH1039
FHOH1040
FMG1470

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG G1470
ChainResidue
GLYS177
GKCX201
GASP203
GGLU204
GCAP1471

site_idBC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CAP G1471
ChainResidue
GTHR173
GLYS175
GLYS177
GKCX201
GASP203
GGLU204
GHIS294
GARG295
GHIS327
GLYS334
GLEU335
GSER379
GGLY380
GGLY381
GGLY403
GGLY404
GHOH1035
GHOH1041
GMG1470
HGLU60
HTHR65
HTRP66
HASN123

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG H1470
ChainResidue
HLYS177
HKCX201
HASP203
HGLU204
HCAP1471

site_idBC7
Number of Residues22
DetailsBINDING SITE FOR RESIDUE CAP H1471
ChainResidue
GGLU60
GTHR65
GTRP66
GASN123
HTHR173
HLYS175
HLYS177
HKCX201
HASP203
HGLU204
HHIS294
HARG295
HHIS327
HLYS334
HLEU335
HSER379
HGLY380
HGLY381
HGLY403
HGLY404
HHOH1040
HMG1470

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A1472
ChainResidue
ALYS18
AASP19
ATRP66
ATHR67
ATHR68

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A1473
ChainResidue
ALYS466
APHE467
AGLU468
APHE469

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C1473
ChainResidue
CTYR24
CTHR68
CVAL69
CASP72
CHOH1057
CEDO1474

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C1474
ChainResidue
CLYS18
CTYR20
CTHR65
CTRP66
CTHR67
CTHR68
CHOH1057
CEDO1473

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C1475
ChainResidue
CARG295
CGLU336
CHOH1043

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO E1472
ChainResidue
ETYR24
ETHR68
EVAL69
EASP72
EHOH1053

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E1473
ChainResidue
ELYS18
ETYR20
ETHR65
ETRP66
ETHR67
ETHR68
EHOH1002

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO E1474
ChainResidue
EGLU52

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO G1472
ChainResidue
GTYR24
GTHR68
GVAL69
GASP72

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO G1473
ChainResidue
GLYS18
GASP19
GTYR20
GTHR65
GTRP66
GTHR67
GTHR68

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO E1475
ChainResidue
ELEU270
EHOH1054
FLEU270
FHOH1028

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A1474
ChainResidue
ALEU270
AHOH1051
AHOH1052
BLEU270

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO H1472
ChainResidue
GLEU270
HLEU270
HHOH1041
HHOH1042

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B1472
ChainResidue
BTYR24
BGLY64
BTHR68
BVAL69
BASP72
BEDO1473

site_idDC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1473
ChainResidue
BLYS18
BTYR20
BTHR65
BTRP66
BTHR67
BTHR68
BEDO1472

site_idDC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO H1473
ChainResidue
HTYR24
HGLY64
HTHR68
HVAL69
HASP72
HHOH1043
HEDO1474

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO H1474
ChainResidue
HLYS18
HASP19
HTRP66
HTHR67
HTHR68
HEDO1473

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO H1475
ChainResidue
HLYS466
HPHE467
HGLU468

site_idDC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO F1472
ChainResidue
FTYR24
FTHR68
FVAL69
FASP72
FLEU77
FHOH1041
FEDO1473

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO F1473
ChainResidue
FLYS18
FASP19
FTHR65
FTRP66
FTHR67
FTHR68
FEDO1472

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D1477
ChainResidue
DTYR24
DGLY64
DTHR68
DVAL69
DASP72
DHOH1002

site_idEC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D1478
ChainResidue
DLYS18
DASP19
DTHR65
DTRP66
DTHR67
DTHR68

site_idEC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1479
ChainResidue
CLEU270
CTHR271
DLEU270
DGLY273
DPHE274

site_idEC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO G1474
ChainResidue
EASP286
EASN287
EHOH1039
GARG215
GLYS252
GSMC256
MVAL63

Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
AGLY196-GLU204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMOD_RES: N-methylmethionine => ECO:0000269|PubMed:11641402
ChainResidueDetails
IMME1
JMME1
KMME1
LMME1
MMME1
NMME1
OMME1
PMME1
ELYS175
EHIS294
FLYS175
FHIS294
GLYS175
GHIS294
HLYS175
HHIS294

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: in homodimeric partner
ChainResidueDetails
AASN123
BASN123
CASN123
DASN123
EASN123
FASN123
GASN123
HASN123

site_idSWS_FT_FI3
Number of Residues40
DetailsBINDING:
ChainResidueDetails
DLYS177
DARG295
DHIS327
DSER379
ETHR173
ELYS177
EARG295
EHIS327
ESER379
FTHR173
FLYS177
FARG295
FHIS327
FSER379
GTHR173
GLYS177
GARG295
GHIS327
GSER379
HTHR173
HLYS177
HARG295
HHIS327
HSER379
ATHR173
ALYS177
AARG295
AHIS327
ASER379
BTHR173
BLYS177
BARG295
BHIS327
BSER379
CTHR173
CLYS177
CARG295
CHIS327
CSER379
DTHR173

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: via carbamate group => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AKCX201
BKCX201
CKCX201
DKCX201
EKCX201
FKCX201
GKCX201
HKCX201

site_idSWS_FT_FI5
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AASP203
AGLU204
BASP203
BGLU204
CASP203
CGLU204
DASP203
DGLU204
EASP203
EGLU204
FASP203
FGLU204
GASP203
GGLU204
HASP203
HGLU204

site_idSWS_FT_FI6
Number of Residues8
DetailsSITE: Transition state stabilizer
ChainResidueDetails
ALYS334
BLYS334
CLYS334
DLYS334
ELYS334
FLYS334
GLYS334
HLYS334

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: N-acetylproline => ECO:0000269|PubMed:16668742
ChainResidueDetails
APRO3
BPRO3
CPRO3
DPRO3
EPRO3
FPRO3
GPRO3
HPRO3

site_idSWS_FT_FI8
Number of Residues16
DetailsMOD_RES: 4-hydroxyproline => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AHYP104
AHYP151
BHYP104
BHYP151
CHYP104
CHYP151
DHYP104
DHYP151
EHYP104
EHYP151
FHYP104
FHYP151
GHYP104
GHYP151
HHYP104
HHYP151

site_idSWS_FT_FI9
Number of Residues8
DetailsMOD_RES: N6-carboxylysine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526, ECO:0000269|PubMed:6302265
ChainResidueDetails
AKCX201
BKCX201
CKCX201
DKCX201
EKCX201
FKCX201
GKCX201
HKCX201

site_idSWS_FT_FI10
Number of Residues16
DetailsMOD_RES: S-methylcysteine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
ASMC256
ASMC369
BSMC256
BSMC369
CSMC256
CSMC369
DSMC256
DSMC369
ESMC256
ESMC369
FSMC256
FSMC369
GSMC256
GSMC369
HSMC256
HSMC369

221051

PDB entries from 2024-06-12

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