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2V68

Crystal structure of Chlamydomonas reinhardtii Rubisco with large- subunit mutations V331A, T342I

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0009507cellular_componentchloroplast
A0009853biological_processphotorespiration
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0009507cellular_componentchloroplast
B0009853biological_processphotorespiration
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0009507cellular_componentchloroplast
C0009853biological_processphotorespiration
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0009507cellular_componentchloroplast
D0009853biological_processphotorespiration
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0009507cellular_componentchloroplast
E0009853biological_processphotorespiration
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0009507cellular_componentchloroplast
F0009853biological_processphotorespiration
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0009507cellular_componentchloroplast
G0009853biological_processphotorespiration
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0009507cellular_componentchloroplast
H0009853biological_processphotorespiration
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE CAP A 477
ChainResidue
ATHR173
ALYS334
ALEU335
ASER379
AGLY380
AGLY381
AGLY403
AGLY404
AMG476
AHOH2157
AHOH2192
ALYS175
AHOH2204
AHOH2231
AHOH2232
AHOH2233
AHOH2234
BGLU60
BTHR65
BTRP66
BASN123
ALYS177
AKCX201
AASP203
AGLU204
AHIS294
AARG295
AHIS327

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 476
ChainResidue
ALYS177
AKCX201
AASP203
AGLU204
ACAP477

site_idAC3
Number of Residues30
DetailsBINDING SITE FOR RESIDUE CAP B 477
ChainResidue
AGLU60
ATHR65
ATRP66
AASN123
AHOH2028
BTHR173
BLYS175
BLYS177
BKCX201
BASP203
BGLU204
BHIS294
BARG295
BHIS327
BLYS334
BLEU335
BSER379
BGLY380
BGLY381
BGLY403
BGLY404
BMG476
BHOH2086
BHOH2088
BHOH2133
BHOH2208
BHOH2209
BHOH2210
BHOH2211
BHOH2212

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 476
ChainResidue
BKCX201
BASP203
BGLU204
BCAP477

site_idAC5
Number of Residues29
DetailsBINDING SITE FOR RESIDUE CAP C 477
ChainResidue
CTHR173
CLYS175
CLYS177
CKCX201
CASP203
CGLU204
CHIS294
CARG295
CHIS327
CLYS334
CLEU335
CSER379
CGLY380
CGLY381
CGLY403
CGLY404
CMG476
CHOH2099
CHOH2100
CHOH2154
CHOH2225
CHOH2226
CHOH2227
CHOH2228
DGLU60
DTHR65
DTRP66
DASN123
DHOH2066

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG C 476
ChainResidue
CCAP477
CKCX201
CASP203
CGLU204

site_idAC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE CAP D 477
ChainResidue
CGLU60
CTHR65
CTRP66
CASN123
DTHR173
DLYS175
DLYS177
DKCX201
DASP203
DGLU204
DHIS294
DARG295
DHIS327
DLYS334
DLEU335
DSER379
DGLY380
DGLY381
DGLY403
DGLY404
DMG476
DHOH2142
DHOH2172
DHOH2181
DHOH2205
DHOH2206
DHOH2207
DHOH2208

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG D 476
ChainResidue
DKCX201
DASP203
DGLU204
DCAP477

site_idAC9
Number of Residues28
DetailsBINDING SITE FOR RESIDUE CAP E 477
ChainResidue
ETHR173
ELYS175
ELYS177
EKCX201
EASP203
EGLU204
EHIS294
EARG295
EHIS327
ELYS334
ELEU335
ESER379
EGLY380
EGLY381
EGLY403
EGLY404
EMG476
EHOH2146
EHOH2179
EHOH2220
EHOH2221
EHOH2222
EHOH2223
EHOH2224
FGLU60
FTHR65
FTRP66
FASN123

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG E 476
ChainResidue
EKCX201
EASP203
EGLU204
ECAP477

site_idBC2
Number of Residues29
DetailsBINDING SITE FOR RESIDUE CAP F 477
ChainResidue
EGLU60
ETHR65
ETRP66
EASN123
EHOH2063
FTHR173
FLYS175
FLYS177
FKCX201
FASP203
FGLU204
FHIS294
FARG295
FHIS327
FLYS334
FLEU335
FSER379
FGLY380
FGLY381
FGLY403
FGLY404
FMG476
FHOH2088
FHOH2205
FHOH2206
FHOH2207
FHOH2208
FHOH2209
FHOH2210

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG F 476
ChainResidue
FLYS177
FKCX201
FASP203
FGLU204
FCAP477

site_idBC4
Number of Residues30
DetailsBINDING SITE FOR RESIDUE CAP G 477
ChainResidue
GTHR173
GLYS175
GLYS177
GKCX201
GASP203
GGLU204
GHIS294
GARG295
GHIS327
GLYS334
GLEU335
GSER379
GGLY380
GGLY381
GGLY403
GGLY404
GMG476
GHOH2085
GHOH2142
GHOH2181
GHOH2217
GHOH2218
GHOH2219
HGLU60
HTHR65
HTRP66
HASN123
HHOH2025
HHOH2027
HHOH2067

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG G 476
ChainResidue
GKCX201
GASP203
GGLU204
GCAP477

site_idBC6
Number of Residues28
DetailsBINDING SITE FOR RESIDUE CAP H 477
ChainResidue
GGLU60
GTHR65
GTRP66
GASN123
GHOH2058
HTHR173
HLYS175
HLYS177
HKCX201
HASP203
HGLU204
HHIS294
HARG295
HHIS327
HLYS334
HLEU335
HSER379
HGLY380
HGLY381
HGLY403
HGLY404
HMG476
HHOH2183
HHOH2195
HHOH2227
HHOH2228
HHOH2229
HHOH2230

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG H 476
ChainResidue
HLYS177
HKCX201
HASP203
HGLU204
HCAP477

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A1477
ChainResidue
ALYS466
APHE467
AGLU468
APHE469
AHOH2237
BHOH2213

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A1484
ChainResidue
AARG295
ASER328
AGLY329
AGLU336
AGLY337
APHE345

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1483
ChainResidue
ALYS18
ATHR65
ATRP66
ATHR67
ATHR68
AEDO1481
AHOH2011
AHOH2235

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1481
ChainResidue
ATYR24
ATHR68
AVAL69
AASP72
AEDO1483
AHOH2035
AHOH2235
AHOH2236

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A1482
ChainResidue
ATYR20
AGLU52
BHOH2216

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1477
ChainResidue
BTYR24
BTHR68
BVAL69
BASP72
BHOH2027
BHOH2032
BHOH2214

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1479
ChainResidue
BLYS466
BPHE467
BGLU468
BPHE469
BHOH2216

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B1480
ChainResidue
BTYR20
BGLU52
BHOH2213

site_idCC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1481
ChainResidue
BLYS18
BTHR65
BTRP66
BTHR67
BTHR68
BHOH2214
BHOH2215

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO C1477
ChainResidue
CGLU52

site_idCC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C1478
ChainResidue
CLYS18
CTHR65
CTRP66
CTHR67
CTHR68
CHOH2030
CHOH2230

site_idDC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C1480
ChainResidue
CTYR24
CGLY64
CTHR68
CVAL69
CASP72
CHOH2030
CHOH2231
CHOH2232

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C1481
ChainResidue
CLYS466
CPHE467
CGLU468
CPHE469
CHOH2229

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C1482
ChainResidue
CGLU336
CGLY337
CASP473
CHOH2165
CHOH2233

site_idDC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO D1477
ChainResidue
DTYR24
DTHR68
DVAL69
DASP72
DEDO1480
DHOH2031
DHOH2211

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D1478
ChainResidue
DLYS466
DPHE467
DGLU468
DPHE469
DHOH2209

site_idDC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO D1480
ChainResidue
DGLY16
DLYS18
DTHR65
DTRP66
DTHR67
DTHR68
DEDO1477
DHOH2210
DHOH2211

site_idDC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO D1481
ChainResidue
CHOH2229
DGLU52

site_idDC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO E1476
ChainResidue
ETYR24
ETHR68
EVAL69
EASP72
ELEU77
EHOH2031
EHOH2035
EHOH2225

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO E1478
ChainResidue
ELYS18
ETHR65
ETRP66
ETHR67
ETHR68
EHOH2009
EHOH2225

site_idEC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO E1480
ChainResidue
EGLU52

site_idEC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO F1484
ChainResidue
FTYR24
FTHR68
FVAL69
FASP72
FLEU77
FHOH2027
FHOH2029
FHOH2033

site_idEC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO F1480
ChainResidue
FTYR20
FGLU52

site_idEC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO F1481
ChainResidue
FARG295
FHIS298
FPHE311
FSER328
FGLU336
FPHE345

site_idEC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO F1482
ChainResidue
FLYS466
FPHE467
FGLU468
FPHE469

site_idEC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO F1483
ChainResidue
FGLY16
FVAL17
FLYS18
FTHR65
FTRP66
FTHR67
FTHR68
FHOH2011
FHOH2027

site_idEC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO G1476
ChainResidue
GTYR24
GTHR68
GVAL69
GASP72
GHOH2025
GHOH2027
GHOH2220

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO G1478
ChainResidue
GLYS18
GTHR65
GTRP66
GTHR67
GTHR68
GHOH2220

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO G1480
ChainResidue
GLYS466
GPHE467
GGLU468
GPHE469
GHOH2221

site_idFC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO H1476
ChainResidue
HTYR24
HTHR68
HVAL69
HASP72
HEDO1482
HHOH2033
HHOH2231
HHOH2232

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO H1478
ChainResidue
HLYS466
HPHE467
HGLU468
HPHE469
HEDO1483

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO H1480
ChainResidue
GHOH2221
HTYR20
HGLU52

site_idFC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO H1481
ChainResidue
HARG295
HSER328
HGLY329
HGLU336
HPHE345

site_idFC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO H1482
ChainResidue
HGLY16
HLYS18
HTHR65
HTRP66
HTHR67
HTHR68
HEDO1476
HHOH2007
HHOH2231

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO H1483
ChainResidue
HPHE469
HEDO1478
HHOH2234

site_idFC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO I1141
ChainResidue
CTYR226
CLYS227
CALA230
ILYS49
IGLU55
IHOH2057
IHOH2058

site_idFC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO I1142
ChainResidue
IGLY37
IILE39
IGLY82
ICYS83
IARG84
IHOH2017

site_idFC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO J1141
ChainResidue
HTYR226
HLYS227
HHOH2113
JLYS49
JGLU55
JHOH2031

site_idGC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO J1142
ChainResidue
JGLY37
JTRP38
JPHE81
JGLY82
JCYS83

site_idGC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO K1141
ChainResidue
KGLY37
KTRP38
KILE39
KPHE81
KGLY82
KCYS83

site_idGC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO K1142
ChainResidue
ETYR226
EHOH2113
KLYS49
KGLU55
KHOH2034
KHOH2036

site_idGC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO L1141
ChainResidue
BTYR226
BALA230
BHOH2111
LLYS49
LGLU55

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO M1141
ChainResidue
GTYR226
GLYS227
MLYS49
MGLU55
MSER56

site_idGC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO N1141
ChainResidue
NILE39
NGLY82

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO N1142
ChainResidue
NLYS49
NGLU55
NASP69
NHOH2031

site_idGC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO O1141
ChainResidue
ATYR226
AHOH2120
OLYS49
OGLU55
OHOH2030

site_idGC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO O1142
ChainResidue
OGLY37
OTRP38
OILE39
OPHE81
OGLY82
OCYS83

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO P1141
ChainResidue
EGLY10
PGLY37
PTRP38
PILE39
PGLY82

Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
AGLY196-GLU204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMOD_RES: N-methylmethionine => ECO:0000269|PubMed:11641402
ChainResidueDetails
IMME1
JMME1
KMME1
LMME1
MMME1
NMME1
OMME1
PMME1
ELYS175
EHIS294
FLYS175
FHIS294
GLYS175
GHIS294
HLYS175
HHIS294

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: in homodimeric partner
ChainResidueDetails
AASN123
BASN123
CASN123
DASN123
EASN123
FASN123
GASN123
HASN123

site_idSWS_FT_FI3
Number of Residues40
DetailsBINDING:
ChainResidueDetails
DLYS177
DARG295
DHIS327
DSER379
ETHR173
ELYS177
EARG295
EHIS327
ESER379
FTHR173
FLYS177
FARG295
FHIS327
FSER379
GTHR173
GLYS177
GARG295
GHIS327
GSER379
HTHR173
HLYS177
HARG295
HHIS327
HSER379
ATHR173
ALYS177
AARG295
AHIS327
ASER379
BTHR173
BLYS177
BARG295
BHIS327
BSER379
CTHR173
CLYS177
CARG295
CHIS327
CSER379
DTHR173

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: via carbamate group => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AKCX201
BKCX201
CKCX201
DKCX201
EKCX201
FKCX201
GKCX201
HKCX201

site_idSWS_FT_FI5
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AASP203
AGLU204
BASP203
BGLU204
CASP203
CGLU204
DASP203
DGLU204
EASP203
EGLU204
FASP203
FGLU204
GASP203
GGLU204
HASP203
HGLU204

site_idSWS_FT_FI6
Number of Residues8
DetailsSITE: Transition state stabilizer
ChainResidueDetails
ALYS334
BLYS334
CLYS334
DLYS334
ELYS334
FLYS334
GLYS334
HLYS334

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: N-acetylproline => ECO:0000269|PubMed:16668742
ChainResidueDetails
APRO3
BPRO3
CPRO3
DPRO3
EPRO3
FPRO3
GPRO3
HPRO3

site_idSWS_FT_FI8
Number of Residues16
DetailsMOD_RES: 4-hydroxyproline => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
AHYP104
AHYP151
BHYP104
BHYP151
CHYP104
CHYP151
DHYP104
DHYP151
EHYP104
EHYP151
FHYP104
FHYP151
GHYP104
GHYP151
HHYP104
HHYP151

site_idSWS_FT_FI9
Number of Residues8
DetailsMOD_RES: N6-carboxylysine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526, ECO:0000269|PubMed:6302265
ChainResidueDetails
AKCX201
BKCX201
CKCX201
DKCX201
EKCX201
FKCX201
GKCX201
HKCX201

site_idSWS_FT_FI10
Number of Residues16
DetailsMOD_RES: S-methylcysteine => ECO:0000269|PubMed:11641402, ECO:0000269|PubMed:11866526
ChainResidueDetails
ASMC256
ASMC369
BSMC256
BSMC369
CSMC256
CSMC369
DSMC256
DSMC369
ESMC256
ESMC369
FSMC256
FSMC369
GSMC256
GSMC369
HSMC256
HSMC369

219869

PDB entries from 2024-05-15

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