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2V3K

The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005880cellular_componentnuclear microtubule
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0019843molecular_functionrRNA binding
A0030490biological_processmaturation of SSU-rRNA
A0030686cellular_component90S preribosome
A0031167biological_processrRNA methylation
A0032040cellular_componentsmall-subunit processome
A0032259biological_processmethylation
A0034399cellular_componentnuclear periphery
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0042802molecular_functionidentical protein binding
A0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
A0070475biological_processrRNA base methylation
A1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A1252
ChainResidue
AARG129
APRO131
AARG132
ATHR133
AARG136
AHOH2137
AHOH2138

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A1253
ChainResidue
ATHR168
ALYS177
AHOH2117
AHOH2139
ALYS135
AARG136

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SAM A1254
ChainResidue
ALEU180
ASER181
APHE182
ALYS195
AVAL206
AGLY207
AMSE209
AALA210
AGLY212
AASP214
APHE216
AGLY226
ALEU227
ASER228
ATYR230
ALEU232
AHOH2141

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:18063569, ECO:0000269|PubMed:21087996
ChainResidueDetails
ALEU180
AGLY207
AGLY212
ALEU227

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with substrate rRNA => ECO:0000269|PubMed:21087996
ChainResidueDetails
AARG88
AARG129
AARG132
AARG136

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Stabilizes Arg-88 => ECO:0000303|PubMed:21087996
ChainResidueDetails
AASP90

223166

PDB entries from 2024-07-31

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