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2V21

Crystal structure of the T. thermophilus dodecin in complex with prebound FMN

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
B0000166molecular_functionnucleotide binding
C0000166molecular_functionnucleotide binding
D0000166molecular_functionnucleotide binding
E0000166molecular_functionnucleotide binding
F0000166molecular_functionnucleotide binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMN A 101
ChainResidue
ALYS3
ATYR5
AASP37
ATRP38
AARG65
BARG45
BTHR47
BGLN57

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMN C 101
ChainResidue
AARG45
ATHR47
AGLN57
CLYS3
CTYR5
CASP37
CTRP38
CARG65
AARG45

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMN F 101
ChainResidue
DVAL11
DARG45
DTHR47
DGLN57
FLYS3
FTYR5
FASP37
FTRP38
FARG65

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA A 1069
ChainResidue
AGLU19
BGLU19
CGLU19

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA F 1069
ChainResidue
CGLU68
DGLU19
EGLU19
FGLU19

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsBINDING: in other chain => ECO:0000269|Ref.4
ChainResidueDetails
ALYS3
BARG65
CLYS3
CARG28
CASP37
CTRP38
CARG65
DLYS3
DARG28
DASP37
DTRP38
AARG28
DARG65
ELYS3
EARG28
EASP37
ETRP38
EARG65
FLYS3
FARG28
FASP37
FTRP38
AASP37
FARG65
ATRP38
AARG65
BLYS3
BARG28
BASP37
BTRP38

site_idSWS_FT_FI2
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|Ref.4
ChainResidueDetails
ALYS6
DLYS6
DARG45
DGLN57
ELYS6
EARG45
EGLN57
FLYS6
FARG45
FGLN57
AARG45
AGLN57
BLYS6
BARG45
BGLN57
CLYS6
CARG45
CGLN57

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: in other chain
ChainResidueDetails
ATHR32
BTHR32
CTHR32
DTHR32
ETHR32
FTHR32

site_idSWS_FT_FI4
Number of Residues6
DetailsSITE: May be important for ligand binding specificity and FMN binding
ChainResidueDetails
AARG65
BARG65
CARG65
DARG65
EARG65
FARG65

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PDB entries from 2024-07-10

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