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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2V19

Crystal structure of the T. thermophilus dodecin R45A mutant

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
B	0000166	molecular_function	nucleotide binding
C	0000166	molecular_function	nucleotide binding
D	0000166	molecular_function	nucleotide binding
E	0000166	molecular_function	nucleotide binding
F	0000166	molecular_function	nucleotide binding
G	0000166	molecular_function	nucleotide binding
H	0000166	molecular_function	nucleotide binding
I	0000166	molecular_function	nucleotide binding
J	0000166	molecular_function	nucleotide binding
K	0000166	molecular_function	nucleotide binding
L	0000166	molecular_function	nucleotide binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN A 101

Chain	Residue
A	LYS3
I	GLN57
I	VAL59
A	TYR5
A	ASP37
A	TRP38
A	ARG65
C	THR47
C	GLN57
G	FMN101
I	VAL11

site_id	AC2
Number of Residues	17
Details	BINDING SITE FOR RESIDUE COA A 201

Chain	Residue
A	ARG28
A	THR32
A	ARG34
A	HIS35
A	PHE64
A	ARG65
A	GLU67
E	LYS6
E	VAL8
E	ARG28
E	LEU33
E	LEU66
E	COA201
G	HIS35
I	LYS6
I	LEU66
I	COA201

site_id	AC3
Number of Residues	15
Details	BINDING SITE FOR RESIDUE COA B 201

Chain	Residue
B	ARG28
B	THR32
B	ARG34
B	HIS35
B	PHE64
B	ARG65
B	GLU67
F	LYS6
F	VAL8
F	ARG28
F	LEU66
F	COA201
J	LYS6
J	LEU66
J	COA201

site_id	AC4
Number of Residues	8
Details	BINDING SITE FOR RESIDUE FMN C 101

Chain	Residue
C	TYR5
C	ASP37
C	TRP38
C	ARG65
F	THR47
F	GLN57
J	FMN101
K	GLN57

site_id	AC5
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA C 201

Chain	Residue
C	ARG28
C	THR32
C	ARG34
C	HIS35
C	ARG65
C	GLU67
G	LYS6
G	VAL8
G	ARG28
G	ALA29
G	LEU33
G	PHE64
G	LEU66
G	COA201
K	LYS6
K	COA201

site_id	AC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE FMN D 101

Chain	Residue
D	LYS3
D	TYR5
D	ASP37
D	TRP38
D	ARG65
E	ALA45
E	THR47
E	GLN57
I	FMN101

site_id	AC7
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA D 201

Chain	Residue
D	ARG28
D	THR32
D	ARG34
D	HIS35
D	ARG65
D	GLU67
H	LYS6
H	VAL8
H	ARG28
H	ALA29
H	LEU33
H	LEU66
H	COA201
L	LYS6
L	LEU66
L	COA201

site_id	AC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE FMN E 101

Chain	Residue
E	TRP38
E	ARG65
F	FMN101
A	GLN57
B	ALA45
B	THR47
B	GLN57
E	LYS3
E	TYR5
E	ASP37

site_id	AC9
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA E 201

Chain	Residue
A	LYS6
A	LEU66
A	COA201
E	ARG28
E	THR32
E	ARG34
E	HIS35
E	PHE64
E	ARG65
E	GLU67
I	LYS6
I	VAL8
I	ARG28
I	LEU33
I	LEU66
I	COA201

site_id	BC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE FMN F 101

Chain	Residue
A	THR47
A	GLN57
B	GLN57
E	FMN101
F	LYS3
F	TYR5
F	ASP37
F	TRP38
F	ARG65

site_id	BC2
Number of Residues	18
Details	BINDING SITE FOR RESIDUE COA F 201

Chain	Residue
B	LYS6
B	LEU66
B	COA201
F	ARG28
F	THR32
F	ARG34
F	HIS35
F	PHE64
F	ARG65
F	GLU67
J	LYS6
J	VAL8
J	ARG28
J	ALA29
J	LEU33
J	LEU66
J	COA201
K	ARG65

site_id	BC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE FMN G 101

Chain	Residue
A	FMN101
C	GLN57
G	LYS3
G	TYR5
G	ASP37
G	TRP38
I	ALA45
I	THR47
I	GLN57

site_id	BC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE COA G 201

Chain	Residue
C	LYS6
C	LEU66
C	COA201
G	ARG28
G	THR32
G	ARG34
G	PHE64
G	ARG65
G	GLU67
K	LYS6
K	VAL8
K	ARG28
K	LEU33
K	LEU66
K	COA201

site_id	BC5
Number of Residues	18
Details	BINDING SITE FOR RESIDUE COA H 201

Chain	Residue
B	HIS35
B	ARG65
D	LYS6
D	LEU66
D	COA201
H	ARG28
H	THR32
H	LEU33
H	ARG34
H	HIS35
H	PHE64
H	ARG65
H	GLU67
L	LYS6
L	VAL8
L	ARG28
L	LEU66
L	COA201

site_id	BC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE FMN I 101

Chain	Residue
D	FMN101
E	GLN57
I	LYS3
I	TYR5
I	ASP37
I	TRP38
I	ARG65
L	THR47
L	GLN57

site_id	BC7
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA I 201

Chain	Residue
A	LYS6
A	VAL8
A	ARG28
A	LEU33
A	LEU66
A	COA201
E	LYS6
E	LEU66
E	COA201
I	ARG28
I	THR32
I	ARG34
I	HIS35
I	PHE64
I	ARG65
I	GLU67

site_id	BC8
Number of Residues	9
Details	BINDING SITE FOR RESIDUE FMN J 101

Chain	Residue
C	FMN101
F	GLN57
J	LYS3
J	TYR5
J	ASP37
J	TRP38
J	ARG65
K	THR47
K	GLN57

site_id	BC9
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA J 201

Chain	Residue
B	LYS6
B	VAL8
B	ARG28
B	LEU33
B	LEU66
B	COA201
F	LYS6
F	LEU66
F	COA201
J	ARG28
J	THR32
J	LEU33
J	ARG34
J	HIS35
J	ARG65
J	GLU67

site_id	CC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE FMN K 101

Chain	Residue
H	THR47
H	GLN57
K	LYS3
K	TYR5
K	ASP37
K	TRP38
K	ARG65
L	FMN101

site_id	CC2
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA K 201

Chain	Residue
C	LYS6
C	VAL8
C	ARG28
C	ALA29
C	LEU33
C	LEU66
C	COA201
G	LYS6
G	LEU66
G	COA201
K	ARG28
K	THR32
K	ARG34
K	HIS35
K	ARG65
K	GLU67

site_id	CC3
Number of Residues	10
Details	BINDING SITE FOR RESIDUE FMN L 101

Chain	Residue
G	ALA45
G	THR47
G	GLN57
H	GLN57
K	FMN101
L	LYS3
L	TYR5
L	ASP37
L	TRP38
L	ARG65

site_id	CC4
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA L 201

Chain	Residue
D	LYS6
D	VAL8
D	ARG28
D	ALA29
D	LEU33
D	LEU66
D	COA201
H	LYS6
H	LEU66
H	COA201
L	ARG28
L	THR32
L	ARG34
L	HIS35
L	ARG65
L	GLU67

site_id	CC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL C 1070

Chain	Residue
C	LYS6
G	LYS6
K	LYS6

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 1070

Chain	Residue
B	LYS6
F	LYS6
J	LYS6

site_id	CC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 1070

Chain	Residue
A	LYS6
E	LYS6
I	LYS6

site_id	CC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL D 1070

Chain	Residue
D	LYS6
H	LYS6
L	LYS6

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL F 1070

Chain	Residue
F	HIS35
F	ARG65
K	GLY2

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	72
Details	Binding site: {"description":"in other chain","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JUL-2008","submissionDatabase":"PDB data bank","title":"Ultrafast charge transfer dynamics in flavoprotein dodecin.","authors":["Gurzadyan G.G.","Meissner B.","Sander B.","Essen L.-O.","Michel-Beyerle M.E."]}}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	36
Details	Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JUL-2008","submissionDatabase":"PDB data bank","title":"Ultrafast charge transfer dynamics in flavoprotein dodecin.","authors":["Gurzadyan G.G.","Meissner B.","Sander B.","Essen L.-O.","Michel-Beyerle M.E."]}}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	48
Details	Binding site: {"description":"in other chain"}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	12
Details	Site: {"description":"May be important for ligand binding specificity and FMN binding"}

Chain

Residue

Details

246031

PDB entries from 2025-12-10

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