Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2V18

Crystal structure of the T. thermophilus dodecin

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
B	0000166	molecular_function	nucleotide binding
C	0000166	molecular_function	nucleotide binding
D	0000166	molecular_function	nucleotide binding
E	0000166	molecular_function	nucleotide binding
F	0000166	molecular_function	nucleotide binding
G	0000166	molecular_function	nucleotide binding
H	0000166	molecular_function	nucleotide binding
I	0000166	molecular_function	nucleotide binding
J	0000166	molecular_function	nucleotide binding
K	0000166	molecular_function	nucleotide binding
L	0000166	molecular_function	nucleotide binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN A 101

Chain	Residue
A	LYS3
H	ARG45
H	GLN57
A	TYR5
A	ASP37
A	TRP38
A	ARG65
B	ARG45
B	THR47
B	GLN57
G	FMN101

site_id	AC2
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN B 101

Chain	Residue
B	LYS3
B	TYR5
B	ASP37
B	TRP38
B	ARG65
C	ARG45
C	THR47
C	GLN57
E	FMN101
F	ARG45
F	GLN57

site_id	AC3
Number of Residues	15
Details	BINDING SITE FOR RESIDUE COA B 201

Chain	Residue
B	ARG28
B	THR32
B	LEU33
B	ARG34
B	HIS35
B	ARG65
B	GLU67
F	LYS6
F	COA201
G	LYS6
G	VAL8
G	ARG28
G	LEU33
G	LEU66
G	COA201

site_id	AC4
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN C 101

Chain	Residue
A	ARG45
A	THR47
A	GLN57
C	LYS3
C	TYR5
C	ASP37
C	TRP38
C	ARG65
J	ARG45
J	GLN57
L	FMN101

site_id	AC5
Number of Residues	19
Details	BINDING SITE FOR RESIDUE COA C 201

Chain	Residue
C	ARG28
C	THR32
C	LEU33
C	ARG34
C	HIS35
C	ARG65
C	LEU66
C	GLU67
E	LYS6
E	VAL8
E	LEU10
E	ALA29
E	LEU33
E	PHE64
E	LEU66
E	COA201
J	LYS6
J	LEU66
J	COA201

site_id	AC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN D 101

Chain	Residue
D	LYS3
D	TYR5
D	ASP37
D	TRP38
D	ARG65
E	ARG45
E	THR47
E	GLN57
J	FMN101
K	ARG45
K	GLN57

site_id	AC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE COA D 201

Chain	Residue
D	ARG28
D	THR32
D	ARG34
D	ARG65
D	GLU67
I	LYS6
I	VAL8
I	LEU66
I	COA201
K	LYS6
K	COA201

site_id	AC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE FMN E 101

Chain	Residue
B	FMN101
C	ARG45
C	GLN57
E	LYS3
E	TYR5
E	ASP37
E	TRP38
F	ARG45
F	THR47
F	GLN57

site_id	AC9
Number of Residues	18
Details	BINDING SITE FOR RESIDUE COA E 201

Chain	Residue
B	HIS35
B	ARG65
C	LYS6
C	COA201
E	ARG28
E	THR32
E	LEU33
E	ARG34
E	HIS35
E	ARG65
E	LEU66
E	GLU67
J	LYS6
J	VAL8
J	ALA29
J	LEU33
J	LEU66
J	COA201

site_id	BC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN F 101

Chain	Residue
D	ARG45
D	THR47
D	GLN57
F	LYS3
F	TYR5
F	ASP37
F	TRP38
F	ARG65
G	ARG45
G	GLN57
I	FMN101

site_id	BC2
Number of Residues	18
Details	BINDING SITE FOR RESIDUE COA F 201

Chain	Residue
B	LYS6
B	VAL8
B	LEU10
B	LEU33
B	LEU66
B	COA201
F	ARG28
F	THR32
F	LEU33
F	ARG34
F	HIS35
F	PHE64
F	ARG65
F	LEU66
F	GLU67
G	LYS6
G	LEU66
G	COA201

site_id	BC3
Number of Residues	12
Details	BINDING SITE FOR RESIDUE FMN G 101

Chain	Residue
A	FMN101
B	VAL11
B	ARG45
B	GLN57
G	LYS3
G	TYR5
G	ASP37
G	TRP38
G	ARG65
H	ARG45
H	THR47
H	GLN57

site_id	BC4
Number of Residues	18
Details	BINDING SITE FOR RESIDUE COA G 201

Chain	Residue
B	LYS6
B	LEU66
B	COA201
D	ARG65
F	LYS6
F	VAL8
F	PHE64
F	LEU66
F	COA201
G	ARG28
G	THR32
G	LEU33
G	ARG34
G	HIS35
G	PHE64
G	ARG65
G	LEU66
G	GLU67

site_id	BC5
Number of Residues	12
Details	BINDING SITE FOR RESIDUE FMN H 101

Chain	Residue
C	HIS35
H	LYS3
H	TYR5
H	ASP37
H	TRP38
H	ARG65
I	ARG45
I	THR47
I	GLN57
K	FMN101
L	VAL11
L	GLN57

site_id	BC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN I 101

Chain	Residue
D	ARG45
D	GLN57
F	FMN101
G	ARG45
G	THR47
G	GLN57
I	LYS3
I	TYR5
I	ASP37
I	TRP38
I	ARG65

site_id	BC7
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA I 201

Chain	Residue
D	LYS6
D	COA201
F	HIS35
I	ARG28
I	THR32
I	LEU33
I	ARG34
I	HIS35
I	PHE64
I	ARG65
I	LEU66
I	GLU67
K	LYS6
K	VAL8
K	LEU66
K	COA201

site_id	BC8
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN J 101

Chain	Residue
D	FMN101
E	ARG45
E	GLN57
J	LYS3
J	TYR5
J	ASP37
J	TRP38
J	ARG65
K	ARG45
K	THR47
K	GLN57

site_id	BC9
Number of Residues	17
Details	BINDING SITE FOR RESIDUE COA J 201

Chain	Residue
C	LYS6
C	VAL8
C	LEU10
C	ALA29
C	LEU33
C	PHE64
C	LEU66
C	COA201
E	LYS6
E	COA201
J	ARG28
J	THR32
J	LEU33
J	ARG34
J	PHE64
J	ARG65
J	GLU67

site_id	CC1
Number of Residues	10
Details	BINDING SITE FOR RESIDUE FMN K 101

Chain	Residue
H	FMN101
I	GLN57
K	LYS3
K	TYR5
K	ASP37
K	TRP38
K	ARG65
L	ARG45
L	THR47
L	GLN57

site_id	CC2
Number of Residues	14
Details	BINDING SITE FOR RESIDUE COA K 201

Chain	Residue
D	LYS6
D	VAL8
D	LEU10
D	COA201
I	LYS6
I	LEU66
I	COA201
K	ARG28
K	THR32
K	ARG34
K	PHE64
K	ARG65
K	LEU66
K	GLU67

site_id	CC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN L 101

Chain	Residue
A	GLN57
C	FMN101
J	ARG45
J	THR47
J	GLN57
K	HIS35
L	LYS3
L	TYR5
L	ASP37
L	TRP38
L	ARG65

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	60
Details	BINDING: in other chain => ECO:0000269\|Ref.4

Chain	Residue	Details
A	LYS3
B	ARG65
C	LYS3
C	ARG28
C	ASP37
C	TRP38
C	ARG65
D	LYS3
D	ARG28
D	ASP37
D	TRP38
A	ARG28
D	ARG65
E	LYS3
E	ARG28
E	ASP37
E	TRP38
E	ARG65
F	LYS3
F	ARG28
F	ASP37
F	TRP38
A	ASP37
F	ARG65
G	LYS3
G	ARG28
G	ASP37
G	TRP38
G	ARG65
H	LYS3
H	ARG28
H	ASP37
H	TRP38
A	TRP38
H	ARG65
I	LYS3
I	ARG28
I	ASP37
I	TRP38
I	ARG65
J	LYS3
J	ARG28
J	ASP37
J	TRP38
A	ARG65
J	ARG65
K	LYS3
K	ARG28
K	ASP37
K	TRP38
K	ARG65
L	LYS3
L	ARG28
L	ASP37
L	TRP38
B	LYS3
L	ARG65
B	ARG28
B	ASP37
B	TRP38

site_id	SWS_FT_FI2
Number of Residues	36
Details	BINDING: BINDING => ECO:0000269\|Ref.4

Chain	Residue	Details
A	LYS6
D	LYS6
D	ARG45
D	GLN57
E	LYS6
E	ARG45
E	GLN57
F	LYS6
F	ARG45
F	GLN57
G	LYS6
A	ARG45
G	ARG45
G	GLN57
H	LYS6
H	ARG45
H	GLN57
I	LYS6
I	ARG45
I	GLN57
J	LYS6
J	ARG45
A	GLN57
J	GLN57
K	LYS6
K	ARG45
K	GLN57
L	LYS6
L	ARG45
L	GLN57
B	LYS6
B	ARG45
B	GLN57
C	LYS6
C	ARG45
C	GLN57

site_id	SWS_FT_FI3
Number of Residues	12
Details	BINDING: in other chain

Chain	Residue	Details
A	THR32
J	THR32
K	THR32
L	THR32
B	THR32
C	THR32
D	THR32
E	THR32
F	THR32
G	THR32
H	THR32
I	THR32

site_id	SWS_FT_FI4
Number of Residues	12
Details	SITE: May be important for ligand binding specificity and FMN binding

Chain	Residue	Details
A	ARG65
J	ARG65
K	ARG65
L	ARG65
B	ARG65
C	ARG65
D	ARG65
E	ARG65
F	ARG65
G	ARG65
H	ARG65
I	ARG65

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)