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2UXD

Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.

Functional Information from GO Data
ChainGOidnamespacecontents
B0003723molecular_functionRNA binding
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0015935cellular_componentsmall ribosomal subunit
B0019843molecular_functionrRNA binding
B0022627cellular_componentcytosolic small ribosomal subunit
B1990904cellular_componentribonucleoprotein complex
C0003676molecular_functionnucleic acid binding
C0003723molecular_functionRNA binding
C0003729molecular_functionmRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0019843molecular_functionrRNA binding
C0022627cellular_componentcytosolic small ribosomal subunit
C1990904cellular_componentribonucleoprotein complex
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0015935cellular_componentsmall ribosomal subunit
D0019843molecular_functionrRNA binding
D0042274biological_processribosomal small subunit biogenesis
D0046872molecular_functionmetal ion binding
D1990904cellular_componentribonucleoprotein complex
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0015935cellular_componentsmall ribosomal subunit
E0019843molecular_functionrRNA binding
E0043229cellular_componentintracellular organelle
E1990904cellular_componentribonucleoprotein complex
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
F0022627cellular_componentcytosolic small ribosomal subunit
F0043229cellular_componentintracellular organelle
F0070181molecular_functionsmall ribosomal subunit rRNA binding
F1990904cellular_componentribonucleoprotein complex
G0000028biological_processribosomal small subunit assembly
G0000049molecular_functiontRNA binding
G0003723molecular_functionRNA binding
G0003729molecular_functionmRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0015935cellular_componentsmall ribosomal subunit
G0019843molecular_functionrRNA binding
G0022627cellular_componentcytosolic small ribosomal subunit
G1990904cellular_componentribonucleoprotein complex
H0003723molecular_functionRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0005737cellular_componentcytoplasm
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
H0022627cellular_componentcytosolic small ribosomal subunit
H0043229cellular_componentintracellular organelle
H1990904cellular_componentribonucleoprotein complex
I0000049molecular_functiontRNA binding
I0003723molecular_functionRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005737cellular_componentcytoplasm
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0019843molecular_functionrRNA binding
I0043229cellular_componentintracellular organelle
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0015935cellular_componentsmall ribosomal subunit
J0019843molecular_functionrRNA binding
J1990904cellular_componentribonucleoprotein complex
K0003723molecular_functionRNA binding
K0003735molecular_functionstructural constituent of ribosome
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K0022627cellular_componentcytosolic small ribosomal subunit
K1990904cellular_componentribonucleoprotein complex
L0000049molecular_functiontRNA binding
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015935cellular_componentsmall ribosomal subunit
L0019843molecular_functionrRNA binding
L1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015935cellular_componentsmall ribosomal subunit
M0019843molecular_functionrRNA binding
M1990904cellular_componentribonucleoprotein complex
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0008270molecular_functionzinc ion binding
N0019843molecular_functionrRNA binding
N0043229cellular_componentintracellular organelle
N0046872molecular_functionmetal ion binding
N1990904cellular_componentribonucleoprotein complex
O0003723molecular_functionRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O0043229cellular_componentintracellular organelle
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015935cellular_componentsmall ribosomal subunit
P0043229cellular_componentintracellular organelle
P1990904cellular_componentribonucleoprotein complex
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0019843molecular_functionrRNA binding
Q0022627cellular_componentcytosolic small ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0003723molecular_functionRNA binding
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0019843molecular_functionrRNA binding
R0070181molecular_functionsmall ribosomal subunit rRNA binding
R1990904cellular_componentribonucleoprotein complex
S0000028biological_processribosomal small subunit assembly
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005737cellular_componentcytoplasm
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
S0019843molecular_functionrRNA binding
S0022627cellular_componentcytosolic small ribosomal subunit
S0043229cellular_componentintracellular organelle
S1990904cellular_componentribonucleoprotein complex
T0003723molecular_functionRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005829cellular_componentcytosol
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0015935cellular_componentsmall ribosomal subunit
T0019843molecular_functionrRNA binding
T0070181molecular_functionsmall ribosomal subunit rRNA binding
T1990904cellular_componentribonucleoprotein complex
V0003723molecular_functionRNA binding
V0005840cellular_componentribosome
V0019843molecular_functionrRNA binding
V1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PAR A 3001
ChainResidue
AG1405
AU1406
AC1407
AA1408
AG1491
AA1492
AA1493
AG1494
AU1495

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3002
ChainResidue
AC866
AG867

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3003
ChainResidue
AA1110
AC1189

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3004
ChainResidue
AG126

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3005
ChainResidue
AG610
AC624

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3006
ChainResidue
AC970

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3008
ChainResidue
AA1360
AG1361

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3009
ChainResidue
AG976
AC1362

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3010
ChainResidue
AC1352
VLYS3

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3011
ChainResidue
AG944
AG945

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3012
ChainResidue
AG1224

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 3013
ChainResidue
AU12
AG21
AG22

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3015
ChainResidue
AA766
AC812

site_idBC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3016
ChainResidue
AA768

site_idBC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3018
ChainResidue
AG800

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3019
ChainResidue
AG576
AC578

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG G 3021
ChainResidue
AG506
AC508
AA509
AA510

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3022
ChainResidue
AU560
AC562

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3023
ChainResidue
AU14

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3024
ChainResidue
AG21

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3025
ChainResidue
AG858
AG869

site_idCC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3027
ChainResidue
AA937

site_idCC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3028
ChainResidue
AC934

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3029
ChainResidue
AG1370
AG1371

site_idCC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3032
ChainResidue
AC980

site_idCC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3033
ChainResidue
AG324

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG G 3034
ChainResidue
AA1067
AG1068
AG1094
AG1387

site_idDC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3036
ChainResidue
AG1526

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG G 3037
ChainResidue
AU1510
AG1511
AU1512
AU1522
AG1523

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3038
ChainResidue
AU182
AG183

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3039
ChainResidue
AC352

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 3041
ChainResidue
AC1303
AG1304
VASP5

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 3045
ChainResidue
AG409
AG410
AA431

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG G 3046
ChainResidue
AC121
AG124
AU125
AG126
AC235
AG236
AC237

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3049
ChainResidue
AG886
AG887

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3050
ChainResidue
AG581
AG758

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3051
ChainResidue
AC972
JLYS57

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3054
ChainResidue
AG627

site_idEC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3055
ChainResidue
AG362

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3056
ChainResidue
AG731

site_idEC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3058
ChainResidue
AG903

site_idEC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3060
ChainResidue
AG168

site_idEC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3061
ChainResidue
AG710

site_idEC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 3064
ChainResidue
AC795
AU1506

site_idEC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 3065
ChainResidue
AU788
AU789
AA792

site_idFC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG G 3067
ChainResidue
AG107
AG324
AA325
AG326

site_idFC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3068
ChainResidue
AA572

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG G 3069
ChainResidue
AU1073
AG1074
AU1083

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG G 3070
ChainResidue
AC817
AG818
AC1527
AU1528

site_idFC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG G 3071
ChainResidue
AG800

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K G 3072
ChainResidue
AG293
AU304
AG305

site_idFC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE K G 3073
ChainResidue
AG577
AU813

site_idFC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE K G 3074
ChainResidue
AG297

site_idFC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE K G 3075
ChainResidue
AG688
AG700

site_idGC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE K G 3076
ChainResidue
AG247

site_idGC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE K G 3079
ChainResidue
AG494

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN G 3080
ChainResidue
DCYS9
DCYS12
DCYS26
DCYS31

site_idGC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN G 3081
ChainResidue
NCYS24
NCYS27
NARG29
NCYS40
NCYS43

Functional Information from PROSITE/UniProt
site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
ChainResidueDetails
NARG23-ARG45

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
ChainResidueDetails
QGLY54-SER66

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
ChainResidueDetails
BVAL7-GLY18

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
ChainResidueDetails
KILE95-ASN117

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
ChainResidueDetails
EGLY23-VAL55

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
ChainResidueDetails
DLEU97-VAL121

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
ChainResidueDetails
SASN53-THR77

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
ChainResidueDetails
RARG32-ARG55

site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
ChainResidueDetails
RLEU66-PHE81

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
ChainResidueDetails
CALA163-GLY197

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
ChainResidueDetails
OLEU39-TYR69

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
ChainResidueDetails
IGLY67-LEU85

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
ChainResidueDetails
GASP20-ALA46

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
ChainResidueDetails
HGLY108-ARG125

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
ChainResidueDetails
FGLY44-ALA53

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
LLYS46-ARG53

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
ChainResidueDetails
JALA27-THR42

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
MARG88-GLN101

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11866529
ChainResidueDetails
DARG10
DARG13
DTYR27
DALA32

218853

PDB entries from 2024-04-24

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