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2RI0

Crystal Structure of glucosamine 6-phosphate deaminase (NagB) from S. mutans

Functional Information from GO Data
ChainGOidnamespacecontents
A0004342molecular_functionglucosamine-6-phosphate deaminase activity
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0006040biological_processamino sugar metabolic process
A0006043biological_processglucosamine catabolic process
A0006044biological_processN-acetylglucosamine metabolic process
A0006046biological_processN-acetylglucosamine catabolic process
A0016787molecular_functionhydrolase activity
A0019262biological_processN-acetylneuraminate catabolic process
A0042802molecular_functionidentical protein binding
B0004342molecular_functionglucosamine-6-phosphate deaminase activity
B0005737cellular_componentcytoplasm
B0005975biological_processcarbohydrate metabolic process
B0006040biological_processamino sugar metabolic process
B0006043biological_processglucosamine catabolic process
B0006044biological_processN-acetylglucosamine metabolic process
B0006046biological_processN-acetylglucosamine catabolic process
B0016787molecular_functionhydrolase activity
B0019262biological_processN-acetylneuraminate catabolic process
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 234
ChainResidue
BALA99
BALA100
BHOH498
BHOH589

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 235
ChainResidue
BLEU94
BASN96
BGLU105
BTYR108
BHOH433

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BTB A 234
ChainResidue
AGLU22
AGLU23
APHE26
ALYS220
BGLU22
BGLU23
BPHE26
BLYS220

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BTB B 236
ChainResidue
AHOH513
BASN96
BGLU105
BHOH400
BHOH436

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor; for enolization step","evidences":[{"source":"HAMAP-Rule","id":"MF_01241","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"For ring-opening step","evidences":[{"source":"HAMAP-Rule","id":"MF_01241","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"Proton acceptor; for ring-opening step","evidences":[{"source":"HAMAP-Rule","id":"MF_01241","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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