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2RFG

Crystal structure of dihydrodipicolinate synthase from Hahella chejuensis at 1.5A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0009436biological_processglyoxylate catabolic process
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0044281biological_processsmall molecule metabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0009436biological_processglyoxylate catabolic process
B0016829molecular_functionlyase activity
B0019877biological_processdiaminopimelate biosynthetic process
B0044281biological_processsmall molecule metabolic process
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
C0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
C0009085biological_processlysine biosynthetic process
C0009089biological_processlysine biosynthetic process via diaminopimelate
C0009436biological_processglyoxylate catabolic process
C0016829molecular_functionlyase activity
C0019877biological_processdiaminopimelate biosynthetic process
C0044281biological_processsmall molecule metabolic process
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0008700molecular_function4-hydroxy-2-oxoglutarate aldolase activity
D0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
D0009085biological_processlysine biosynthetic process
D0009089biological_processlysine biosynthetic process via diaminopimelate
D0009436biological_processglyoxylate catabolic process
D0016829molecular_functionlyase activity
D0019877biological_processdiaminopimelate biosynthetic process
D0044281biological_processsmall molecule metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 298
ChainResidue
AHOH660
AHOH667
AHOH833
AHOH868
AHOH907
BHOH451

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH A 501
ChainResidue
AHOH557
AHOH700
AGLU20
AGLU54
AARG57

Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. GLVpvGTTGESptlteeE
ChainResidueDetails
AGLY37-GLU54

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNIPprAvvdIkpetmarlaalpr.IvGVKDA
ChainResidueDetails
ATYR132-ALA162

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
AARG137
ALYS160
ATYR132

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
BARG137
BLYS160
BTYR132

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
CARG137
CLYS160
CTYR132

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
DARG137
DLYS160
DTYR132

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
ATHR44
ATHR43
ALYS160

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
BTHR44
BTHR43
BLYS160

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
CTHR44
CTHR43
CLYS160

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dhp
ChainResidueDetails
DTHR44
DTHR43
DLYS160

219140

PDB entries from 2024-05-01

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