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2RF7

Crystal structure of the escherichia coli nrfa mutant Q263E

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0005509molecular_functioncalcium ion binding
A0009061biological_processanaerobic respiration
A0016491molecular_functionoxidoreductase activity
A0016966molecular_functionnitric oxide reductase activity
A0019645biological_processanaerobic electron transport chain
A0020037molecular_functionheme binding
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042128biological_processnitrate assimilation
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0005506molecular_functioniron ion binding
B0005509molecular_functioncalcium ion binding
B0009061biological_processanaerobic respiration
B0016491molecular_functionoxidoreductase activity
B0016966molecular_functionnitric oxide reductase activity
B0019645biological_processanaerobic electron transport chain
B0020037molecular_functionheme binding
B0030288cellular_componentouter membrane-bounded periplasmic space
B0042128biological_processnitrate assimilation
B0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
C0005506molecular_functioniron ion binding
C0005509molecular_functioncalcium ion binding
C0009061biological_processanaerobic respiration
C0016491molecular_functionoxidoreductase activity
C0016966molecular_functionnitric oxide reductase activity
C0019645biological_processanaerobic electron transport chain
C0020037molecular_functionheme binding
C0030288cellular_componentouter membrane-bounded periplasmic space
C0042128biological_processnitrate assimilation
C0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
C0042597cellular_componentperiplasmic space
C0046872molecular_functionmetal ion binding
D0005506molecular_functioniron ion binding
D0005509molecular_functioncalcium ion binding
D0009061biological_processanaerobic respiration
D0016491molecular_functionoxidoreductase activity
D0016966molecular_functionnitric oxide reductase activity
D0019645biological_processanaerobic electron transport chain
D0020037molecular_functionheme binding
D0030288cellular_componentouter membrane-bounded periplasmic space
D0042128biological_processnitrate assimilation
D0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
D0042597cellular_componentperiplasmic space
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 1501
ChainResidue
AGLU215
ATYR216
ALYS261
AGLU263
AHOH516
AHOH535

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 1502
ChainResidue
AHEC3
AHEC4
APRO91

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 1501
ChainResidue
BGLU215
BTYR216
BLYS261
BGLU263
BHOH494
BHOH583

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA B 1502
ChainResidue
BHEC3
BHEC4
BPRO91

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 1501
ChainResidue
CGLU215
CTYR216
CLYS261
CGLU263
CHOH886
CHOH913

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA C 1502
ChainResidue
CHEC3
CHEC4
CPRO91

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 1501
ChainResidue
DGLU215
DTYR216
DLYS261
DGLU263
DHOH507
DHOH666

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA D 1502
ChainResidue
DHEC3
DHEC4
DPRO91

site_idAC9
Number of Residues25
DetailsBINDING SITE FOR RESIDUE HEC A 1
ChainResidue
AHEC3
ATYR88
AASN89
AASP100
ATHR104
AARG106
ALEU118
ACYS122
ACYS125
ALYS126
ACYS212
AHIS213
ATYR216
AVAL225
AHIS264
AHIS388
AHOH490
AHOH493
AHOH506
AHOH515
AHOH521
AHOH542
AHOH575
AHOH879
AHOH880

site_idBC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC A 2
ChainResidue
AHEC3
AHIS49
AGLN52
ATRP56
AGLY159
ACYS160
ACYS163
AHIS164
APHE171
AGLY174
AARG201
AGLN205
AILE283
ALYS289
ATYR298
ATHR299
AHIS301
AHOH705
AHOH727
AHOH844

site_idBC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A 3
ChainResidue
AILE303
AHOH518
AHOH821
ACA1502
AHEC1
AHEC2
AGLN62
APRO91
AARG92
AGLY93
AHIS94
APHE96
AALA97
AASP100
ACYS125
ALEU158
AVAL208
ACYS209
ACYS212
AHIS213
AHIS286
AMET287

site_idBC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC A 4
ChainResidue
AHEC5
AHIS213
AGLU266
ATRP270
AHIS275
AVAL280
ATHR281
ACYS282
ACYS285
AHIS286
AASN305
APRO306
APHE307
AVAL329
AHIS391
AMET392
AHIS393
AHOH553
AHOH688
AHOH710
AHOH753
AHOH799
AHOH800
ACA1502

site_idBC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC A 5
ChainResidue
AHEC4
AILE274
AHIS275
AVAL280
APHE307
ATHR313
ACYS314
ACYS317
AHIS318
AARG332
AMET392
AHOH618
AHOH641
AHOH810
BHEC5
BHIS318
BGLN320
BHOH721

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 480
ChainResidue
APHE307
AASP308
AASN309
APHE310
AALA311
ALYS322
AHOH915

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 7
ChainResidue
AMET233
ALYS234
AVAL235
AGLU268
AGLU397
AMET401
AHOH525

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 10
ChainResidue
AASP411
ATHR414
ALYS415
AARG418
AHOH751
AHOH850
BARG413

site_idBC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1
ChainResidue
BHEC3
BTYR88
BASN89
BASP100
BTHR104
BARG106
BCYS122
BCYS125
BLYS126
BCYS212
BHIS213
BTYR216
BHIS264
BHIS388
BHOH482
BHOH486
BHOH487
BHOH490
BHOH491
BHOH493
BHOH546
BHOH924
BHOH925

site_idBC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC B 2
ChainResidue
BHEC3
BHIS49
BGLN52
BTRP56
BGLY159
BCYS160
BCYS163
BHIS164
BPHE171
BGLY174
BARG201
BGLN205
BILE283
BLYS289
BTYR298
BTHR299
BHIS301
BHOH552
BHOH578

site_idCC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 3
ChainResidue
BHEC1
BHEC2
BHEC4
BGLN62
BPRO91
BARG92
BGLY93
BHIS94
BPHE96
BALA97
BASP100
BCYS125
BLEU158
BVAL208
BCYS209
BCYS212
BHIS213
BHIS286
BMET287
BILE303
BHOH500
BHOH665
BCA1502

site_idCC2
Number of Residues27
DetailsBINDING SITE FOR RESIDUE HEC B 4
ChainResidue
BHEC3
BHEC5
BCYS209
BHIS213
BGLU266
BTRP270
BHIS275
BVAL280
BTHR281
BCYS282
BCYS285
BHIS286
BASN305
BPRO306
BPHE307
BVAL329
BHIS388
BHIS391
BMET392
BHIS393
BHOH527
BHOH615
BHOH641
BHOH695
BHOH748
BHOH809
BCA1502

site_idCC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC B 5
ChainResidue
AHEC5
AILE274
AHIS318
AGLN320
BHEC4
BEDO15
BILE274
BHIS275
BVAL280
BASP284
BPHE307
BTHR313
BCYS314
BCYS317
BHIS318
BARG332
BMET392
BHOH659
BHOH685

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 480
ChainResidue
BPHE307
BASP308
BPHE310
BALA311
BLYS322

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 481
ChainResidue
ALYS198
BGLU197
BGLN204
BHOH662

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 6
ChainResidue
BMET233
BLYS234
BVAL235
BGLU397
BMET401
BHOH598

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 8
ChainResidue
BTHR99
BARG102
BASN157
BGLU467
BHOH679
BHOH853

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 12
ChainResidue
BALA246
BSER248
BPRO258
BHOH645

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 14
ChainResidue
BSER55
BTYR298
BASP300
BHOH716
BHOH878
BHOH892

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 15
ChainResidue
BHEC5
BASP284
BASN316
BHOH676
CHOH1087

site_idDC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC C 1
ChainResidue
CHEC3
CTYR88
CASN89
CASP100
CTHR104
CARG106
CLEU118
CCYS122
CCYS125
CLYS126
CCYS212
CHIS213
CTYR216
CHIS264
CHIS388
CHOH863
CHOH865
CHOH866
CHOH887
CHOH893
CHOH894
CHOH905
CHOH1329
CHOH1330

site_idDC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC C 2
ChainResidue
CHEC3
CHIS49
CGLN52
CTYR53
CTRP56
CGLY159
CCYS160
CCYS163
CHIS164
CPHE171
CGLY174
CARG201
CGLN205
CILE283
CLYS289
CTYR298
CTHR299
CHIS301
CHOH933
CHOH953

site_idDC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC C 3
ChainResidue
CHEC1
CHEC2
CHEC4
CGLN62
CPRO91
CARG92
CGLY93
CHIS94
CPHE96
CALA97
CASP100
CCYS125
CLEU158
CVAL208
CCYS209
CCYS212
CHIS213
CHIS286
CMET287
CILE303
CHOH875
CHOH916
CCA1502

site_idDC5
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC C 4
ChainResidue
CHEC3
CHEC5
CHIS213
CTRP270
CHIS275
CVAL280
CTHR281
CCYS282
CCYS285
CHIS286
CASN305
CPRO306
CPHE307
CHIS388
CHIS391
CMET392
CHIS393
CHOH975
CHOH1060
CHOH1300
CHOH1309
CCA1502

site_idDC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC C 5
ChainResidue
CHEC4
CILE274
CHIS275
CASN278
CVAL280
CTHR313
CCYS314
CCYS317
CHIS318
CARG332
CMET392
CHOH1118
DHEC5
DILE274
DHIS318
DGLN320

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 9
ChainResidue
CMET233
CLYS234
CVAL235
CGLU268
CGLU397
CMET401
CHOH944

site_idDC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 11
ChainResidue
CASP411
CTHR414
CLYS415
CARG418
CHOH1014
CHOH1084
DARG413

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C 13
ChainResidue
CALA311
CALA315

site_idEC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE HEC D 1
ChainResidue
DHEC3
DTYR88
DASN89
DPRO91
DASP100
DTHR104
DARG106
DLEU118
DALA121
DCYS122
DCYS125
DLYS126
DCYS212
DHIS213
DTYR216
DHIS264
DHIS388
DHOH485
DHOH489
DHOH490
DHOH498
DHOH499
DHOH526
DHOH543
DHOH760
DHOH761

site_idEC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC D 2
ChainResidue
DHIS49
DGLN52
DTRP56
DGLY159
DCYS160
DCYS163
DHIS164
DGLY174
DPRO176
DLEU178
DARG201
DGLN205
DILE283
DLYS289
DTYR298
DTHR299
DHIS301
DILE303

site_idEC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC D 3
ChainResidue
DHEC1
DHEC4
DGLN62
DPRO91
DARG92
DGLY93
DHIS94
DPHE96
DALA97
DASP100
DCYS125
DLYS126
DLEU158
DVAL208
DCYS209
DCYS212
DHIS213
DHIS286
DMET287
DILE303
DCA1502

site_idEC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC D 4
ChainResidue
DHEC3
DHEC5
DHIS213
DGLU266
DTRP270
DHIS275
DVAL280
DTHR281
DCYS282
DCYS285
DHIS286
DASN305
DPRO306
DHIS388
DHIS391
DMET392
DHIS393
DHOH534
DHOH702
DCA1502

site_idEC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC D 5
ChainResidue
CHEC5
CILE274
CHIS318
CGLN320
DHEC4
DHIS275
DPHE307
DTHR313
DCYS314
DCYS317
DHIS318
DARG332
DMET392
DHOH619
DHOH682
DHOH748

site_idEC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO D 480
ChainResidue
DPHE307
DASP308
DASN309
DPHE310
DALA311
DLYS322
DHOH786

site_idEC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO D 481
ChainResidue
CARG413
CHOH1034
DASP411
DTHR414
DLYS415
DARG418
DHOH785

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues36
DetailsBINDING: axial binding residue => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR
ChainResidueDetails
AHIS94
BHIS94
BLYS126
BHIS164
BHIS213
BHIS275
BHIS286
BHIS301
BHIS318
BHIS393
CHIS94
ALYS126
CLYS126
CHIS164
CHIS213
CHIS275
CHIS286
CHIS301
CHIS318
CHIS393
DHIS94
DLYS126
AHIS164
DHIS164
DHIS213
DHIS275
DHIS286
DHIS301
DHIS318
DHIS393
AHIS213
AHIS275
AHIS286
AHIS301
AHIS318
AHIS393

site_idSWS_FT_FI2
Number of Residues32
DetailsBINDING: covalent => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR
ChainResidueDetails
ACYS122
BCYS125
BCYS160
BCYS163
BCYS209
BCYS212
BCYS282
BCYS314
CCYS122
CCYS125
CCYS160
ACYS125
CCYS163
CCYS209
CCYS212
CCYS282
CCYS314
DCYS122
DCYS125
DCYS160
DCYS163
DCYS209
ACYS160
DCYS212
DCYS282
DCYS314
ACYS163
ACYS209
ACYS212
ACYS282
ACYS314
BCYS122

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR
ChainResidueDetails
AGLU215
ALYS261
BGLU215
BLYS261
CGLU215
CLYS261
DGLU215
DLYS261

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
ATYR216
AHIS264
BTYR216
BHIS264
CTYR216
CHIS264
DTYR216
DHIS264

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR
ChainResidueDetails
AGLU263
BGLU263
CGLU263
DGLU263

site_idSWS_FT_FI6
Number of Residues8
DetailsBINDING: covalent => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7
ChainResidueDetails
ACYS285
ACYS317
BCYS285
BCYS317
CCYS285
CCYS317
DCYS285
DCYS317

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PDB entries from 2024-07-24

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