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2RD5

Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0003991molecular_functionacetylglutamate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006526biological_processarginine biosynthetic process
A0016301molecular_functionkinase activity
B0003991molecular_functionacetylglutamate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006526biological_processarginine biosynthetic process
B0016301molecular_functionkinase activity
C0006808biological_processregulation of nitrogen utilization
C0030234molecular_functionenzyme regulator activity
D0006808biological_processregulation of nitrogen utilization
D0030234molecular_functionenzyme regulator activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 2002
ChainResidue
BASP196
BGLY251
BLYS255
BADP2000

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG C 1001
ChainResidue
CGLY48
CATP1000

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG D 1001
ChainResidue
DGLY48
DATP1000

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ARG A 1000
ChainResidue
ALYS210
ALYS232
AGLU284
AILE285
ASER287
AGLU289
AGLY290
AGLY292
AMET294
APHE33

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ADP A 2000
ChainResidue
AGLY219
ALEU221
ALYS247
AVAL248
AALA249
AGLY251
AMET252
ALYS255

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NLG A 2001
ChainResidue
AGLY75
AGLY76
AARG98
AASN192
AALA195

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ARG B 1000
ChainResidue
BPHE33
BLYS210
BLYS232
BGLU284
BILE285
BSER287
BGLU289
BGLY290
BGLY292
BMET294

site_idAC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ADP B 2000
ChainResidue
AGLN152
BLYS41
BGLY43
BGLY44
BALA45
BTHR215
BASP216
BGLY219
BLEU221
BLYS224
BLYS247
BALA249
BGLY251
BMET252
BLYS255
BMG2002
BHOH2005
BHOH2023

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE NLG B 2001
ChainResidue
BGLY75
BGLY76
BGLY77
BLEU97
BARG98
BASN192
BASN194
BALA195
BHOH2005

site_idBC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP C 1000
ChainResidue
CILE18
CGLY38
CVAL39
CTHR40
CGLY46
CPHE47
CGLY48
CGLN50
CLYS70
CGLU74
CVAL76
CILE98
CGLY99
CGLY101
CLYS102
CPHE104
CARG113
CARG115
CMET126
CMG1001
CHOH1005

site_idBC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP D 1000
ChainResidue
DVAL76
DILE98
DGLY99
DGLY101
DLYS102
DARG113
DARG115
DMET126
DMG1001
DHOH1009
DHOH1012
DILE18
DGLY38
DVAL39
DTHR40
DGLY46
DPHE47
DGLY48
DGLN50
DLYS70
DGLU74

Functional Information from PROSITE/UniProt
site_idPS00638
Number of Residues14
DetailsPII_GLNB_CTER P-II protein C-terminal region signature. TgeiGDGKIFVlpV
ChainResidueDetails
CTHR95-VAL108

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
CGLY46
CGLY99
DGLY46
DGLY99
BGLY76
BTHR215

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17913711
ChainResidueDetails
CGLY48
BLYS210
BLEU221
BLYS232
BGLU284
BGLY292
DGLY48
ALYS210
ALEU221
ALYS232
AGLU284
AGLY292
BARG98
BASN192

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:17913711, ECO:0007744|PDB:2RD5
ChainResidueDetails
ALYS247
BLYS247

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N-acetylthreonine => ECO:0007744|PubMed:22223895
ChainResidueDetails
ATHR1
BTHR1

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1oh9
ChainResidueDetails
AGLY44
ALYS255
AGLY77
ALYS41

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1oh9
ChainResidueDetails
BGLY44
BLYS255
BGLY77
BLYS41

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PDB entries from 2024-07-24

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