2QJL
Crystal structure of Urm1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001403 | biological_process | invasive growth in response to glucose limitation |
| A | 0002098 | biological_process | tRNA wobble uridine modification |
| A | 0002143 | biological_process | tRNA wobble position uridine thiolation |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0007114 | biological_process | cell budding |
| A | 0008033 | biological_process | tRNA processing |
| A | 0031386 | molecular_function | protein tag activity |
| A | 0032447 | biological_process | protein urmylation |
| A | 0034227 | biological_process | tRNA thio-modification |
| A | 0034599 | biological_process | cellular response to oxidative stress |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0097163 | molecular_function | sulfur carrier activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1001 |
| Chain | Residue |
| A | HOH2058 |
| A | HOH2079 |
| A | HOH2085 |
| A | HOH2102 |
| A | HOH2114 |
| A | HOH2158 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1002 |
| Chain | Residue |
| A | HOH2165 |
| A | HOH2170 |
| A | HOH2221 |
| A | HOH2109 |
| A | HOH2154 |
| A | HOH2162 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO A 2001 |
| Chain | Residue |
| A | ILE38 |
| A | SER60 |
| A | ILE61 |
| A | TRP74 |
| A | LYS80 |
| A | HOH2067 |
| A | HOH2179 |
| A | HOH2185 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"1-thioglycine","evidences":[{"source":"HAMAP-Rule","id":"MF_03048","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18491921","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19145231","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19151091","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)","evidences":[{"source":"HAMAP-Rule","id":"MF_03048","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
