Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2QJL

Crystal structure of Urm1

Functional Information from GO Data
ChainGOidnamespacecontents
A0001403biological_processinvasive growth in response to glucose limitation
A0002098biological_processtRNA wobble uridine modification
A0002143biological_processtRNA wobble position uridine thiolation
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0007114biological_processcell budding
A0008033biological_processtRNA processing
A0031386molecular_functionprotein tag activity
A0032447biological_processprotein urmylation
A0034227biological_processtRNA thio-modification
A0034599biological_processcellular response to oxidative stress
A0042803molecular_functionprotein homodimerization activity
A0097163molecular_functionsulfur carrier activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1001
ChainResidue
AHOH2058
AHOH2079
AHOH2085
AHOH2102
AHOH2114
AHOH2158

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AHOH2165
AHOH2170
AHOH2221
AHOH2109
AHOH2154
AHOH2162

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 2001
ChainResidue
AILE38
ASER60
AILE61
ATRP74
ALYS80
AHOH2067
AHOH2179
AHOH2185

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: 1-thioglycine => ECO:0000255|HAMAP-Rule:MF_03048, ECO:0000269|PubMed:18491921, ECO:0000269|PubMed:19145231, ECO:0000269|PubMed:19151091
ChainResidueDetails
AGLY99

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|HAMAP-Rule:MF_03048
ChainResidueDetails
AGLY99

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon