2QJL
Crystal structure of Urm1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001403 | biological_process | invasive growth in response to glucose limitation |
A | 0002098 | biological_process | tRNA wobble uridine modification |
A | 0002143 | biological_process | tRNA wobble position uridine thiolation |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0007114 | biological_process | cell budding |
A | 0008033 | biological_process | tRNA processing |
A | 0031386 | molecular_function | protein tag activity |
A | 0032447 | biological_process | protein urmylation |
A | 0034227 | biological_process | tRNA thio-modification |
A | 0034599 | biological_process | cellular response to oxidative stress |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0097163 | molecular_function | sulfur carrier activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1001 |
Chain | Residue |
A | HOH2058 |
A | HOH2079 |
A | HOH2085 |
A | HOH2102 |
A | HOH2114 |
A | HOH2158 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1002 |
Chain | Residue |
A | HOH2165 |
A | HOH2170 |
A | HOH2221 |
A | HOH2109 |
A | HOH2154 |
A | HOH2162 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 2001 |
Chain | Residue |
A | ILE38 |
A | SER60 |
A | ILE61 |
A | TRP74 |
A | LYS80 |
A | HOH2067 |
A | HOH2179 |
A | HOH2185 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | MOD_RES: 1-thioglycine => ECO:0000255|HAMAP-Rule:MF_03048, ECO:0000269|PubMed:18491921, ECO:0000269|PubMed:19145231, ECO:0000269|PubMed:19151091 |
Chain | Residue | Details |
A | GLY99 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|HAMAP-Rule:MF_03048 |
Chain | Residue | Details |
A | GLY99 |