2Q3U
Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g08170, agmatine iminohydrolase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004668 | molecular_function | protein-arginine deiminase activity |
A | 0006596 | biological_process | polyamine biosynthetic process |
A | 0009446 | biological_process | putrescine biosynthetic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0033388 | biological_process | putrescine biosynthetic process from arginine |
A | 0047632 | molecular_function | agmatine deiminase activity |
B | 0004668 | molecular_function | protein-arginine deiminase activity |
B | 0006596 | biological_process | polyamine biosynthetic process |
B | 0009446 | biological_process | putrescine biosynthetic process |
B | 0016787 | molecular_function | hydrolase activity |
B | 0033388 | biological_process | putrescine biosynthetic process from arginine |
B | 0047632 | molecular_function | agmatine deiminase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 801 |
Chain | Residue |
B | ASP119 |
B | TRP120 |
B | SER143 |
B | HOH929 |
B | HOH944 |
B | HOH987 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 802 |
Chain | Residue |
A | HOH1040 |
A | HOH1055 |
A | HOH1180 |
A | ASP119 |
A | TRP120 |
A | SER143 |
site_id | AC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO A 901 |
Chain | Residue |
A | ASN35 |
A | ASP89 |
A | TRP91 |
A | TRP125 |
A | CYS132 |
A | THR221 |
A | ARG301 |
A | ALA360 |
A | HOH1225 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 902 |
Chain | Residue |
A | ARG337 |
A | ASP341 |
A | HOH1077 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 903 |
Chain | Residue |
A | TRP91 |
A | ASP94 |
A | TRP125 |
A | GLY361 |
A | GLY362 |
A | HOH1383 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 904 |
Chain | Residue |
B | TRP91 |
B | ASP94 |
B | GLY361 |
B | GLY362 |
B | CYS366 |
B | HOH983 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 905 |
Chain | Residue |
B | TRP19 |
B | ARG233 |
B | HIS346 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 906 |
Chain | Residue |
A | ASN123 |
A | GLY126 |
A | ILE160 |
A | LYS184 |
A | ASN185 |
A | ARG186 |
A | PRO188 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 907 |
Chain | Residue |
A | TYR216 |
A | GLY217 |
A | ASP218 |
A | GLU219 |
A | ARG252 |
A | HOH1064 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 908 |
Chain | Residue |
A | GLU84 |
A | HOH1038 |
B | GLU84 |
B | LEU149 |
B | HOH993 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 909 |
Chain | Residue |
B | SER55 |
B | PHE57 |
B | GLU58 |
B | PRO59 |
B | HOH1148 |
B | HOH1149 |
site_id | BC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 910 |
Chain | Residue |
A | THR246 |
A | TYR283 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 911 |
Chain | Residue |
B | TRP125 |
B | ASP130 |
B | CYS132 |
B | ASN185 |
B | GLU219 |
B | ASP220 |
B | ASN222 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO B 912 |
Chain | Residue |
B | SER7 |
B | ARG154 |
B | GLN156 |
B | HOH965 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 913 |
Chain | Residue |
B | TYR14 |
B | PRO16 |
B | ASP20 |
B | ALA373 |
B | HOH972 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MPO A 9000 |
Chain | Residue |
A | TYR14 |
A | GLY172 |
A | GLY204 |
A | GLN206 |
A | HOH1051 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Amidino-cysteine intermediate => ECO:0000250|UniProtKB:Q837U5 |
Chain | Residue | Details |
A | CYS366 | |
B | CYS366 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:G7JT50 |
Chain | Residue | Details |
A | ASP220 | |
A | ASP226 | |
B | ASP220 | |
B | ASP226 |