2Q1U
Crystal structure of the Bordetella bronchiseptica enzyme WbmF in complex with NAD+ and UDP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0006541 | biological_process | glutamine metabolic process |
| A | 0008460 | molecular_function | dTDP-glucose 4,6-dehydratase activity |
| A | 0010253 | biological_process | UDP-rhamnose biosynthetic process |
| A | 0010280 | molecular_function | UDP-L-rhamnose synthase activity |
| A | 0010315 | biological_process | auxin export across the plasma membrane |
| A | 0016740 | molecular_function | transferase activity |
| A | 0050377 | molecular_function | UDP-glucose 4,6-dehydratase activity |
| A | 0051555 | biological_process | flavonol biosynthetic process |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0006541 | biological_process | glutamine metabolic process |
| B | 0008460 | molecular_function | dTDP-glucose 4,6-dehydratase activity |
| B | 0010253 | biological_process | UDP-rhamnose biosynthetic process |
| B | 0010280 | molecular_function | UDP-L-rhamnose synthase activity |
| B | 0010315 | biological_process | auxin export across the plasma membrane |
| B | 0016740 | molecular_function | transferase activity |
| B | 0050377 | molecular_function | UDP-glucose 4,6-dehydratase activity |
| B | 0051555 | biological_process | flavonol biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 34 |
| Details | BINDING SITE FOR RESIDUE NAD A 601 |
| Chain | Residue |
| A | GLY19 |
| A | ALA49 |
| A | SER66 |
| A | ILE67 |
| A | LEU86 |
| A | ALA87 |
| A | THR88 |
| A | HIS90 |
| A | ASN105 |
| A | THR109 |
| A | SER129 |
| A | GLY22 |
| A | ALA130 |
| A | TYR161 |
| A | LYS165 |
| A | PHE188 |
| A | GLN189 |
| A | ASN190 |
| A | VAL191 |
| A | ARG212 |
| A | GOL801 |
| A | HOH803 |
| A | PHE23 |
| A | HOH805 |
| A | HOH823 |
| A | HOH827 |
| A | HOH828 |
| A | HOH829 |
| A | VAL24 |
| A | ASP44 |
| A | ASN45 |
| A | LEU46 |
| A | LEU47 |
| A | SER48 |
| site_id | AC2 |
| Number of Residues | 34 |
| Details | BINDING SITE FOR RESIDUE NAD B 602 |
| Chain | Residue |
| B | GLY19 |
| B | GLY22 |
| B | PHE23 |
| B | VAL24 |
| B | ASP44 |
| B | ASN45 |
| B | LEU46 |
| B | LEU47 |
| B | SER48 |
| B | ALA49 |
| B | SER66 |
| B | ILE67 |
| B | LEU86 |
| B | ALA87 |
| B | THR88 |
| B | HIS90 |
| B | ASN105 |
| B | THR109 |
| B | SER129 |
| B | ALA130 |
| B | TYR161 |
| B | LYS165 |
| B | PHE188 |
| B | GLN189 |
| B | ASN190 |
| B | VAL191 |
| B | ARG212 |
| B | GOL802 |
| B | HOH808 |
| B | HOH809 |
| B | HOH821 |
| B | HOH854 |
| B | HOH855 |
| B | HOH891 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE UDP A 701 |
| Chain | Residue |
| A | VAL214 |
| A | PHE218 |
| A | PRO229 |
| A | GLU231 |
| A | ALA236 |
| A | HOH872 |
| A | HOH994 |
| A | HOH1048 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE UDP B 702 |
| Chain | Residue |
| B | VAL214 |
| B | PHE218 |
| B | PRO229 |
| B | GLU231 |
| B | ALA236 |
| B | ARG238 |
| B | HOH859 |
| B | HOH965 |
| B | HOH1010 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 801 |
| Chain | Residue |
| A | HIS90 |
| A | GLY91 |
| A | ASN92 |
| A | TYR161 |
| A | ASN213 |
| A | NAD601 |
| A | HOH856 |
| A | HOH902 |
| A | HOH1040 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL B 802 |
| Chain | Residue |
| B | NAD602 |
| B | HOH889 |
| B | HOH890 |
| B | HOH1008 |
| B | HIS90 |
| B | GLY91 |
| B | ASN92 |
| B | TYR161 |
| B | ASN213 |
