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2Q1F

Crystal structure of chondroitin sulfate lyase abc from bacteroides thetaiotaomicron wal2926

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005576cellular_componentextracellular region
A0005975biological_processcarbohydrate metabolic process
A0006027biological_processglycosaminoglycan catabolic process
A0016829molecular_functionlyase activity
A0030246molecular_functioncarbohydrate binding
A0034000molecular_functionchondroitin-sulfate-ABC endolyase activity
B0003824molecular_functioncatalytic activity
B0005576cellular_componentextracellular region
B0005975biological_processcarbohydrate metabolic process
B0006027biological_processglycosaminoglycan catabolic process
B0016829molecular_functionlyase activity
B0030246molecular_functioncarbohydrate binding
B0034000molecular_functionchondroitin-sulfate-ABC endolyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 2001
ChainResidue
ASER24
AGLU26
AASP50
AHIS53
AASP161

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 2002
ChainResidue
ATYR336
AARG375
AARG378

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 2003
ChainResidue
AALA310
AGLY311
AARG315
ATYR305

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 2004
ChainResidue
ATHR241
ALYS245
AARG300

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 2005
ChainResidue
AILE745
AASP746
AGLY747
AMSE748
AASP885

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 2006
ChainResidue
ASER1007
ATYR1008
AHOH2041

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 2007
ChainResidue
ATYR253
AGLU585
AASN586

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 2008
ChainResidue
AHIS190
ATRP191
AHIS345

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 A 2009
ChainResidue
AARG267
ALYS281

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 2002
ChainResidue
BSER24
BGLU26
BASP50
BHIS53
BASP161

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 2003
ChainResidue
BTYR336
BARG375
BARG378

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 2004
ChainResidue
BTYR305
BALA310
BGLY311
BARG315

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 2005
ChainResidue
BLYS245
BARG300

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 2006
ChainResidue
BTYR630
BGLY698
BMSE699
BGLU700

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 2007
ChainResidue
BARG267
BLYS281

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 2008
ChainResidue
BHIS190
BTRP191
BHIS345

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 2009
ChainResidue
BTYR461
BARG514
BHIS515

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 2010
ChainResidue
BHIS453
BHIS454
BTYR461

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:18227125, ECO:0000269|PubMed:18512954
ChainResidueDetails
AHIS345
AHIS454
BHIS345
BHIS454

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000269|PubMed:18227125, ECO:0000269|PubMed:18512954
ChainResidueDetails
ATYR461
BTYR461

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:18227125
ChainResidueDetails
ASER24
BASP161
AGLU26
AASP50
AHIS53
AASP161
BSER24
BGLU26
BASP50
BHIS53

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for catalytic activity against all substrates => ECO:0000269|PubMed:18227125
ChainResidueDetails
AARG172
BARG172

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Important for catalytic activity against dermatan sulfate substrate => ECO:0000269|PubMed:18227125, ECO:0000269|PubMed:18512954
ChainResidueDetails
AHIS344
BHIS344

site_idSWS_FT_FI6
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000269|PubMed:18227125
ChainResidueDetails
AARG514
BARG514

site_idSWS_FT_FI7
Number of Residues2
DetailsSITE: Important for catalytic activity against all substrates => ECO:0000269|PubMed:18227125, ECO:0000269|PubMed:18512954
ChainResidueDetails
AGLU628
BGLU628

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c82
ChainResidueDetails
AASN401
AHIS454
ATYR461

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c82
ChainResidueDetails
BASN401
BHIS454
BTYR461

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c82
ChainResidueDetails
AARG514
AHIS454
ATYR461

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c82
ChainResidueDetails
BARG514
BHIS454
BTYR461

223790

PDB entries from 2024-08-14

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