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2PXA

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH and GTPG

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE GTP A 401
ChainResidue
ALYS13
ASER215
AHOH444
AHOH560
AHOH619
BARG42
ALEU16
AASN17
AMET19
APHE24
AARG28
ASER150
ASER151
APRO152

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GTP B 403
ChainResidue
BLYS13
BLEU16
BASN17
BMET19
BPHE24
BARG28
BSER150
BSER151
BPRO152
BARG213
BSER215
BHOH527
BHOH592

site_idAC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE SAH B 500
ChainResidue
BSER56
BGLY58
BGLY81
BCYS82
BGLY83
BGLY86
BTRP87
BTHR104
BLYS105
BHIS110
BGLU111
BVAL130
BASP131
BVAL132
BPHE133
BASP146
BHOH524
BHOH563
BHOH564
BHOH602

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SAH A 500
ChainResidue
ASER56
AGLY58
AGLY81
ACYS82
AGLY86
ATRP87
ATHR104
ALYS105
AHIS110
AVAL130
AASP131
AVAL132
APHE133
AASP146
AILE147
AHOH448
AHOH658

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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