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2PX5

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH (Orthorhombic crystal form)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 902
ChainResidue
AARG28
AARG213
ASER215
AASN216
AHOH719
AHOH766

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 903
ChainResidue
AARG57
AARG84
AHOH504
AHOH618
AARG37
AARG41
AVAL55

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 904
ChainResidue
AARG63
AARG160
AVAL258
AASN259
AHOH562
AHOH709
AHOH761

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 905
ChainResidue
AARG44
AARG84
AGLU111

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 906
ChainResidue
BARG37
BARG41
BARG84
BHOH577

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 907
ChainResidue
BARG63
BGLN159
BARG160
BVAL258
BASN259
BHOH638
BHOH862

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 908
ChainResidue
BARG44
BARG84
BGLU111
BHOH769

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 910
ChainResidue
BARG28
BARG213
BSER215
BASN216
BHOH512

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 911
ChainResidue
AARG243

site_idBC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SAH A 500
ChainResidue
ASER56
AGLY58
AGLY81
ACYS82
AGLY86
ATRP87
ALYS105
AHIS110
AGLU111
AVAL130
AASP131
AVAL132
APHE133
AASP146
AHOH508
AHOH513
AHOH520

site_idBC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE SAH B 500
ChainResidue
BSER56
BGLY58
BTHR59
BGLY81
BCYS82
BGLY83
BGLY86
BTRP87
BLYS105
BHIS110
BGLU111
BVAL130
BASP131
BVAL132
BPHE133
BASP146
BGLU149
BHOH509
BHOH516
BHOH534

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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