2PS5
N225D Trichodiene Synthase: Complex With Mg and Pyrophosphate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0016106 | biological_process | sesquiterpenoid biosynthetic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016838 | molecular_function | carbon-oxygen lyase activity, acting on phosphates |
| A | 0045482 | molecular_function | trichodiene synthase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0016106 | biological_process | sesquiterpenoid biosynthetic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016838 | molecular_function | carbon-oxygen lyase activity, acting on phosphates |
| B | 0045482 | molecular_function | trichodiene synthase activity |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 701 |
| Chain | Residue |
| B | ASP225 |
| B | SER229 |
| B | GLU233 |
| B | POP700 |
| B | HOH929 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 702 |
| Chain | Residue |
| B | HOH933 |
| B | HOH934 |
| B | ASP100 |
| B | POP700 |
| B | MG703 |
| B | HOH932 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE MG B 703 |
| Chain | Residue |
| B | ASP100 |
| B | POP700 |
| B | MG702 |
| B | HOH930 |
| B | HOH931 |
| B | HOH932 |
| B | HOH935 |
| site_id | AC4 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE POP B 700 |
| Chain | Residue |
| B | ASP100 |
| B | ARG182 |
| B | ASP225 |
| B | SER229 |
| B | LYS232 |
| B | GLU233 |
| B | ARG304 |
| B | TYR305 |
| B | MG701 |
| B | MG702 |
| B | MG703 |
| B | HOH896 |
| B | HOH929 |
| B | HOH930 |
| B | HOH931 |
| B | HOH933 |
| B | HOH934 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 801 |
| Chain | Residue |
| A | PHE114 |
| B | TYR113 |
| B | TRP128 |
| B | ASN132 |
| B | PHE135 |
| B | HOH819 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 802 |
| Chain | Residue |
| A | TYR113 |
| A | TRP128 |
| A | ASN132 |
| A | HOH842 |
| B | PHE114 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 803 |
| Chain | Residue |
| A | MET73 |
| A | TYR295 |
| A | HOH845 |
| A | HOH928 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | Region: {"description":"Aspartate-rich domain","evidences":[{"source":"PubMed","id":"8823172","evidenceCode":"ECO:0000303"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17996718","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PS7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15835903","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16171386","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17996718","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YYQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YYR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YYU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2AET","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PS8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16171386","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17996718","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2AEK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PS4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 8 |
| Details | M-CSA 262 |
| Chain | Residue | Details |
| A | TYR93 | electrostatic stabiliser, polar/non-polar interaction, van der waals interaction |
| A | THR96 | steric role, van der waals interaction |
| A | LEU97 | steric role, van der waals interaction |
| A | ASP100 | electrostatic stabiliser, metal ligand |
| A | ARG182 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| A | LYS232 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| A | ARG304 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| A | TYR305 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| site_id | MCSA2 |
| Number of Residues | 8 |
| Details | M-CSA 262 |
| Chain | Residue | Details |
| B | TYR93 | electrostatic stabiliser, polar/non-polar interaction, van der waals interaction |
| B | THR96 | steric role, van der waals interaction |
| B | LEU97 | steric role, van der waals interaction |
| B | ASP100 | electrostatic stabiliser, metal ligand |
| B | ARG182 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| B | LYS232 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| B | ARG304 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
| B | TYR305 | electrostatic stabiliser, hydrogen bond donor, increase nucleophilicity, promote heterolysis |
