2PKQ
Crystal structure of the photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase, complexed with NADP
Functional Information from GO Data
Chain | GOid | namespace | contents |
O | 0006006 | biological_process | glucose metabolic process |
O | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
O | 0050661 | molecular_function | NADP binding |
O | 0051287 | molecular_function | NAD binding |
P | 0006006 | biological_process | glucose metabolic process |
P | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
P | 0050661 | molecular_function | NADP binding |
P | 0051287 | molecular_function | NAD binding |
Q | 0006006 | biological_process | glucose metabolic process |
Q | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Q | 0050661 | molecular_function | NADP binding |
Q | 0051287 | molecular_function | NAD binding |
R | 0006006 | biological_process | glucose metabolic process |
R | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
R | 0050661 | molecular_function | NADP binding |
R | 0051287 | molecular_function | NAD binding |
S | 0006006 | biological_process | glucose metabolic process |
S | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
S | 0050661 | molecular_function | NADP binding |
S | 0051287 | molecular_function | NAD binding |
T | 0006006 | biological_process | glucose metabolic process |
T | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
T | 0050661 | molecular_function | NADP binding |
T | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 O 370 |
Chain | Residue |
O | THR179 |
O | ASP181 |
O | NDP363 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 P 371 |
Chain | Residue |
P | THR179 |
P | ASP181 |
P | ARG195 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 P 372 |
Chain | Residue |
P | THR208 |
P | SER148 |
P | CYS149 |
P | THR150 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 Q 373 |
Chain | Residue |
Q | ASP181 |
Q | ARG195 |
Q | ARG231 |
Q | TYR361 |
Q | NDP365 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 R 374 |
Chain | Residue |
R | THR179 |
R | ASP181 |
R | ARG195 |
R | NDP366 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 R 375 |
Chain | Residue |
R | THR150 |
R | THR208 |
R | ARG231 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 S 376 |
Chain | Residue |
S | THR179 |
S | ASP181 |
S | ARG195 |
S | ARG231 |
S | NDP367 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 S 377 |
Chain | Residue |
S | SER148 |
S | CYS149 |
S | THR150 |
S | THR208 |
S | ARG231 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 T 378 |
Chain | Residue |
T | ASP181 |
T | ARG231 |
T | TYR361 |
T | NDP368 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 T 379 |
Chain | Residue |
T | SER148 |
T | CYS149 |
T | THR150 |
T | THR208 |
T | ALA210 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 S 380 |
Chain | Residue |
S | GLU253 |
S | ASN256 |
S | ARG260 |
S | ASP275 |
S | SER294 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE SO4 R 381 |
Chain | Residue |
R | CYS274 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 Q 382 |
Chain | Residue |
Q | GLY138 |
Q | HIS139 |
Q | LYS331 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 T 383 |
Chain | Residue |
S | GLU276 |
T | THR41 |
T | VAL57 |
T | LYS58 |
T | ILE59 |
site_id | BC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 Q 384 |
Chain | Residue |
Q | LYS107 |
T | LYS248 |
site_id | BC7 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE NDP O 363 |
Chain | Residue |
O | PHE8 |
O | GLY9 |
O | ARG10 |
O | ILE11 |
O | ASN31 |
O | ARG77 |
O | GLY95 |
O | THR96 |
O | GLY97 |
O | THR119 |
O | CYS149 |
O | ASN313 |
O | GLU314 |
O | TYR317 |
O | SO4370 |
site_id | BC8 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE NDP P 364 |
Chain | Residue |
P | GLY7 |
P | GLY9 |
P | ARG10 |
P | ILE11 |
P | ASN31 |
P | ASP32 |
P | THR33 |
P | ASP76 |
P | ARG77 |
P | GLY95 |
P | GLY97 |
P | THR119 |
P | ALA120 |
P | CYS149 |
P | THR179 |
P | ASN313 |
P | GLU314 |
P | TYR317 |
Q | GLU362 |
site_id | BC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE NDP Q 365 |
Chain | Residue |
Q | GLU314 |
Q | SO4373 |
Q | GLY9 |
Q | ARG10 |
Q | ILE11 |
Q | ARG77 |
Q | GLY97 |
Q | THR119 |
Q | CYS149 |
Q | ASN313 |
site_id | CC1 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE NDP R 366 |
Chain | Residue |
O | GLU362 |
R | GLY9 |
R | ARG10 |
R | ILE11 |
R | ASP32 |
R | THR33 |
R | ARG77 |
R | THR96 |
R | GLY97 |
R | THR119 |
R | ALA120 |
R | THR179 |
R | ASN313 |
R | TYR317 |
R | SO4374 |
site_id | CC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE NDP S 367 |
Chain | Residue |
S | GLY9 |
S | ARG10 |
S | ILE11 |
S | ASP32 |
S | THR33 |
S | ASP76 |
S | ARG77 |
S | GLY95 |
S | GLY97 |
S | THR119 |
S | ALA120 |
S | THR179 |
S | ASN313 |
S | GLU314 |
S | TYR317 |
S | SO4376 |
site_id | CC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE NDP T 368 |
Chain | Residue |
T | GLY7 |
T | PHE8 |
T | GLY9 |
T | ARG10 |
T | ILE11 |
T | ASN31 |
T | ARG77 |
T | GLY95 |
T | THR96 |
T | GLY97 |
T | THR119 |
T | ALA120 |
T | CYS149 |
T | ASN313 |
T | GLU314 |
T | TYR317 |
T | SO4378 |
Functional Information from PROSITE/UniProt
site_id | PS00071 |
Number of Residues | 8 |
Details | GAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL |
Chain | Residue | Details |
P | ALA147-LEU154 | |
O | ALA147-LEU154 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | ACT_SITE: Nucleophile |
Chain | Residue | Details |
P | CYS149 | |
R | CYS149 | |
S | CYS149 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11846565, ECO:0000269|PubMed:12705826, ECO:0000269|PubMed:15236965, ECO:0000269|PubMed:17573533 |
Chain | Residue | Details |
P | ARG10 | |
S | ASP32 | |
S | ARG77 | |
S | ASN313 | |
P | ASP32 | |
P | ARG77 | |
P | ASN313 | |
R | ARG10 | |
R | ASP32 | |
R | ARG77 | |
R | ASN313 | |
S | ARG10 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
P | SER148 | |
R | ARG231 | |
S | SER148 | |
S | THR179 | |
S | ARG195 | |
S | THR208 | |
S | ARG231 | |
P | THR179 | |
P | ARG195 | |
P | THR208 | |
P | ARG231 | |
R | SER148 | |
R | THR179 | |
R | ARG195 | |
R | THR208 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | SITE: Activates thiol group during catalysis => ECO:0000250 |
Chain | Residue | Details |
P | HIS176 | |
R | HIS176 | |
S | HIS176 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
P | CYS149 | |
P | HIS176 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
R | CYS149 | |
R | HIS176 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
S | CYS149 | |
S | HIS176 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
O | CYS149 | |
O | HIS176 |
site_id | CSA5 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
Q | CYS149 | |
Q | HIS176 |
site_id | CSA6 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1szj |
Chain | Residue | Details |
T | CYS149 | |
T | HIS176 |