Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2PAN

Crystal structure of E. coli glyoxylate carboligase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0003824	molecular_function	catalytic activity
A	0005948	cellular_component	acetolactate synthase complex
A	0009028	molecular_function	tartronate-semialdehyde synthase activity
A	0009097	biological_process	isoleucine biosynthetic process
A	0009099	biological_process	L-valine biosynthetic process
A	0009436	biological_process	glyoxylate catabolic process
A	0016829	molecular_function	lyase activity
A	0019752	biological_process	carboxylic acid metabolic process
A	0030976	molecular_function	thiamine pyrophosphate binding
A	0042802	molecular_function	identical protein binding
A	0046296	biological_process	glycolate catabolic process
A	0050660	molecular_function	flavin adenine dinucleotide binding
A	0071949	molecular_function	FAD binding
B	0000287	molecular_function	magnesium ion binding
B	0003824	molecular_function	catalytic activity
B	0005948	cellular_component	acetolactate synthase complex
B	0009028	molecular_function	tartronate-semialdehyde synthase activity
B	0009097	biological_process	isoleucine biosynthetic process
B	0009099	biological_process	L-valine biosynthetic process
B	0009436	biological_process	glyoxylate catabolic process
B	0016829	molecular_function	lyase activity
B	0019752	biological_process	carboxylic acid metabolic process
B	0030976	molecular_function	thiamine pyrophosphate binding
B	0042802	molecular_function	identical protein binding
B	0046296	biological_process	glycolate catabolic process
B	0050660	molecular_function	flavin adenine dinucleotide binding
B	0071949	molecular_function	FAD binding
C	0000287	molecular_function	magnesium ion binding
C	0003824	molecular_function	catalytic activity
C	0005948	cellular_component	acetolactate synthase complex
C	0009028	molecular_function	tartronate-semialdehyde synthase activity
C	0009097	biological_process	isoleucine biosynthetic process
C	0009099	biological_process	L-valine biosynthetic process
C	0009436	biological_process	glyoxylate catabolic process
C	0016829	molecular_function	lyase activity
C	0019752	biological_process	carboxylic acid metabolic process
C	0030976	molecular_function	thiamine pyrophosphate binding
C	0042802	molecular_function	identical protein binding
C	0046296	biological_process	glycolate catabolic process
C	0050660	molecular_function	flavin adenine dinucleotide binding
C	0071949	molecular_function	FAD binding
D	0000287	molecular_function	magnesium ion binding
D	0003824	molecular_function	catalytic activity
D	0005948	cellular_component	acetolactate synthase complex
D	0009028	molecular_function	tartronate-semialdehyde synthase activity
D	0009097	biological_process	isoleucine biosynthetic process
D	0009099	biological_process	L-valine biosynthetic process
D	0009436	biological_process	glyoxylate catabolic process
D	0016829	molecular_function	lyase activity
D	0019752	biological_process	carboxylic acid metabolic process
D	0030976	molecular_function	thiamine pyrophosphate binding
D	0042802	molecular_function	identical protein binding
D	0046296	biological_process	glycolate catabolic process
D	0050660	molecular_function	flavin adenine dinucleotide binding
D	0071949	molecular_function	FAD binding
E	0000287	molecular_function	magnesium ion binding
E	0003824	molecular_function	catalytic activity
E	0005948	cellular_component	acetolactate synthase complex
E	0009028	molecular_function	tartronate-semialdehyde synthase activity
E	0009097	biological_process	isoleucine biosynthetic process
E	0009099	biological_process	L-valine biosynthetic process
E	0009436	biological_process	glyoxylate catabolic process
E	0016829	molecular_function	lyase activity
E	0019752	biological_process	carboxylic acid metabolic process
E	0030976	molecular_function	thiamine pyrophosphate binding
E	0042802	molecular_function	identical protein binding
E	0046296	biological_process	glycolate catabolic process
E	0050660	molecular_function	flavin adenine dinucleotide binding
E	0071949	molecular_function	FAD binding
F	0000287	molecular_function	magnesium ion binding
F	0003824	molecular_function	catalytic activity
F	0005948	cellular_component	acetolactate synthase complex
F	0009028	molecular_function	tartronate-semialdehyde synthase activity
F	0009097	biological_process	isoleucine biosynthetic process
F	0009099	biological_process	L-valine biosynthetic process
F	0009436	biological_process	glyoxylate catabolic process
F	0016829	molecular_function	lyase activity
F	0019752	biological_process	carboxylic acid metabolic process
F	0030976	molecular_function	thiamine pyrophosphate binding
F	0042802	molecular_function	identical protein binding
F	0046296	biological_process	glycolate catabolic process
F	0050660	molecular_function	flavin adenine dinucleotide binding
F	0071949	molecular_function	FAD binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG A 851

Chain	Residue
A	ASP446
A	ASN473
A	TYR475
A	TPP801

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 1501

Chain	Residue
A	GLU454
A	PHE451
A	PHE451
A	LEU452
A	LEU452
A	GLU454

site_id	AC3
Number of Residues	34
Details	BINDING SITE FOR RESIDUE FAD A 701

Chain	Residue
A	PHE114
A	ARG154
A	GLY211
A	GLY212
A	GLY213
A	ASN216
A	ALA217
A	THR237
A	LEU238
A	MSE239
A	VAL255
A	GLY256
A	LEU257
A	GLN258
A	THR259
A	GLY278
A	ASN279
A	ARG280
A	ALA282
A	ARG284
A	HIS285
A	ASP302
A	ILE303
A	GLU304
A	GLN307
A	SER320
A	ASP321
A	ALA322
A	GLN397
A	GLY416
A	HOH1097
A	HOH1109
A	HOH2089
A	HOH3120

site_id	AC4
Number of Residues	19
Details	BINDING SITE FOR RESIDUE TPP A 801

Chain	Residue
A	PRO26
A	ASP82
A	GLN115
A	GLY394
A	LEU395
A	SER396
A	GLY419
A	LEU421
A	ASP446
A	PHE447
A	ASP448
A	ASN473
A	TYR475
A	LEU476
A	GLY477
A	LEU478
A	ILE479
A	MG851
A	HOH1110

site_id	AC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE DTT A 901

Chain	Residue
A	GLN258
A	MSE563
A	GLY564
A	HOH1074
A	HOH1076

site_id	AC6
Number of Residues	10
Details	BINDING SITE FOR RESIDUE 1PE A 951

Chain	Residue
A	VAL570
A	MSE571
A	GLU572
A	PHE573
A	GLU574
A	HOH3136
C	MSE571
C	GLU572
C	PHE573
C	GLU574

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG B 851

Chain	Residue
B	ASP446
B	ASN473
B	TYR475
B	TPP801

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG B 1501

Chain	Residue
B	PHE451
B	PHE451
B	LEU452
B	LEU452
B	GLU454
B	GLU454

site_id	AC9
Number of Residues	32
Details	BINDING SITE FOR RESIDUE FAD B 701

Chain	Residue
B	LEU257
B	GLN258
B	THR259
B	GLY278
B	ASN279
B	ARG280
B	ALA282
B	ARG284
B	HIS285
B	ASP302
B	ILE303
B	GLU304
B	GLN307
B	SER320
B	ASP321
B	ALA322
B	GLN397
B	GLY416
B	GLN417
B	HOH1089
B	HOH2105
B	PHE114
B	PRO155
B	GLY211
B	GLY212
B	GLY213
B	ALA217
B	THR237
B	LEU238
B	MSE239
B	VAL255
B	GLY256

site_id	BC1
Number of Residues	20
Details	BINDING SITE FOR RESIDUE TPP B 801

Chain	Residue
B	PRO26
B	ASP82
B	GLN115
B	GLY394
B	LEU395
B	SER396
B	GLY419
B	LEU421
B	GLY445
B	ASP446
B	PHE447
B	ASP448
B	ASN473
B	TYR475
B	LEU476
B	GLY477
B	LEU478
B	ILE479
B	MG851
B	HOH3088

site_id	BC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE DTT B 901

Chain	Residue
B	MSE563
B	GLY564

site_id	BC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG C 851

Chain	Residue
C	ASP446
C	ASN473
C	TYR475
C	TPP801

site_id	BC4
Number of Residues	34
Details	BINDING SITE FOR RESIDUE FAD C 701

Chain	Residue
C	ARG154
C	PRO155
C	GLY211
C	GLY212
C	GLY213
C	ASN216
C	ALA217
C	THR237
C	LEU238
C	MSE239
C	VAL255
C	GLY256
C	LEU257
C	GLN258
C	THR259
C	GLY278
C	ASN279
C	ARG280
C	ALA282
C	ARG284
C	HIS285
C	ASP302
C	ILE303
C	GLU304
C	GLN307
C	SER320
C	ASP321
C	ALA322
C	GLN397
C	GLY416
C	GLN417
C	HOH1102
C	HOH3110
E	PHE114

site_id	BC5
Number of Residues	19
Details	BINDING SITE FOR RESIDUE TPP C 801

Chain	Residue
C	GLY394
C	LEU395
C	SER396
C	GLY419
C	LEU421
C	GLY445
C	ASP446
C	PHE447
C	ASP448
C	ASN473
C	TYR475
C	GLY477
C	LEU478
C	ILE479
C	MG851
E	PRO26
E	THR75
E	ASP82
E	GLN115

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE DTT C 901

Chain	Residue
C	GLN258
C	MSE563
C	GLY564
C	SER565
C	HOH2080

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG D 851

Chain	Residue
D	ASP446
D	ASN473
D	TYR475
D	TPP801

site_id	BC8
Number of Residues	32
Details	BINDING SITE FOR RESIDUE FAD D 701

Chain	Residue
D	PRO155
D	GLY211
D	GLY212
D	GLY213
D	ASN216
D	ALA217
D	THR237
D	LEU238
D	MSE239
D	VAL255
D	GLY256
D	LEU257
D	GLN258
D	THR259
D	GLY278
D	ASN279
D	ARG280
D	ALA282
D	ARG284
D	HIS285
D	ASP302
D	ILE303
D	GLU304
D	GLN307
D	SER320
D	ASP321
D	ALA322
D	GLN397
D	GLY416
D	GLN417
D	HOH2060
F	PHE114

site_id	BC9
Number of Residues	18
Details	BINDING SITE FOR RESIDUE TPP D 801

Chain	Residue
D	GLY394
D	LEU395
D	SER396
D	GLY419
D	LEU421
D	GLY445
D	ASP446
D	PHE447
D	ASP448
D	ASN473
D	TYR475
D	LEU476
D	GLY477
D	LEU478
D	ILE479
D	MG851
F	ASP82
F	GLN115

site_id	CC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE DTT D 901

Chain	Residue
D	GLN258
D	MSE563
D	GLY564

site_id	CC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG E 851

Chain	Residue
E	ASP446
E	ASN473
E	TYR475
E	TPP801

site_id	CC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG E 1501

Chain	Residue
C	PHE451
C	LEU452
C	GLU454
E	PHE451
E	LEU452
E	GLU454

site_id	CC4
Number of Residues	31
Details	BINDING SITE FOR RESIDUE FAD E 701

Chain	Residue
C	PHE114
E	GLY211
E	GLY212
E	GLY213
E	ASN216
E	ALA217
E	THR237
E	LEU238
E	MSE239
E	VAL255
E	GLY256
E	LEU257
E	GLN258
E	THR259
E	GLY278
E	ASN279
E	ARG280
E	ALA282
E	ARG284
E	HIS285
E	ASP302
E	ILE303
E	GLU304
E	GLN307
E	SER320
E	ASP321
E	ALA322
E	GLN397
E	GLY416
E	GLN417
E	HOH1031

site_id	CC5
Number of Residues	19
Details	BINDING SITE FOR RESIDUE TPP E 801

Chain	Residue
C	PRO26
C	ASP82
C	GLN115
E	GLY394
E	LEU395
E	SER396
E	GLY419
E	LEU421
E	GLY445
E	ASP446
E	PHE447
E	ASP448
E	ASN473
E	TYR475
E	LEU476
E	GLY477
E	LEU478
E	ILE479
E	MG851

site_id	CC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE DTT E 901

Chain	Residue
E	GLN258
E	ARG284
E	MSE563
E	GLY564

site_id	CC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG F 851

Chain	Residue
F	ASP446
F	ASN473
F	TYR475
F	TPP801

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG F 1501

Chain	Residue
D	PHE451
D	GLU454
F	PHE451
F	LEU452
F	GLU454

site_id	CC9
Number of Residues	31
Details	BINDING SITE FOR RESIDUE FAD F 701

Chain	Residue
D	PHE114
F	PRO155
F	GLY211
F	GLY212
F	GLY213
F	ASN216
F	ALA217
F	THR237
F	LEU238
F	MSE239
F	VAL255
F	GLY256
F	LEU257
F	GLN258
F	THR259
F	GLY278
F	ASN279
F	ARG280
F	ALA282
F	ARG284
F	HIS285
F	ASP302
F	ILE303
F	GLU304
F	GLN307
F	SER320
F	ASP321
F	ALA322
F	GLN397
F	GLY416
F	GLN417

site_id	DC1
Number of Residues	20
Details	BINDING SITE FOR RESIDUE TPP F 801

Chain	Residue
D	PRO26
D	THR75
D	ASP82
D	GLN115
F	GLY394
F	LEU395
F	SER396
F	GLY419
F	LEU421
F	GLY445
F	ASP446
F	PHE447
F	ASP448
F	ASN473
F	TYR475
F	LEU476
F	GLY477
F	LEU478
F	ILE479
F	MG851

site_id	DC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE DTT F 901

Chain	Residue
F	LEU257
F	GLN258
F	ARG284
F	MSE563
F	GLY564
F	HOH1061

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
A	ILE561

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
B	ILE561

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
C	ILE561

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
D	ILE561

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
E	ILE561

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1ni4

Chain	Residue	Details
F	ILE561

site_id	MCSA1
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
A	HIS45	polar/non-polar interaction
A	THR75	electrostatic stabiliser, polar/non-polar interaction
A	SER501	polar/non-polar interaction
A	GLU556	polar/non-polar interaction
A	THR559	polar/non-polar interaction

site_id	MCSA2
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
B	HIS45	polar/non-polar interaction
B	THR75	electrostatic stabiliser, polar/non-polar interaction
B	SER501	polar/non-polar interaction
B	GLU556	polar/non-polar interaction
B	THR559	polar/non-polar interaction

site_id	MCSA3
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
C	HIS45	polar/non-polar interaction
C	THR75	electrostatic stabiliser, polar/non-polar interaction
C	SER501	polar/non-polar interaction
C	GLU556	polar/non-polar interaction
C	THR559	polar/non-polar interaction

site_id	MCSA4
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
D	HIS45	polar/non-polar interaction
D	THR75	electrostatic stabiliser, polar/non-polar interaction
D	SER501	polar/non-polar interaction
D	GLU556	polar/non-polar interaction
D	THR559	polar/non-polar interaction

site_id	MCSA5
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
E	HIS45	polar/non-polar interaction
E	THR75	electrostatic stabiliser, polar/non-polar interaction
E	SER501	polar/non-polar interaction
E	GLU556	polar/non-polar interaction
E	THR559	polar/non-polar interaction

site_id	MCSA6
Number of Residues	5
Details	M-CSA 298

Chain	Residue	Details
F	HIS45	polar/non-polar interaction
F	THR75	electrostatic stabiliser, polar/non-polar interaction
F	SER501	polar/non-polar interaction
F	GLU556	polar/non-polar interaction
F	THR559	polar/non-polar interaction

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)