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2PAA

Crystal structure of phosphoglycerate kinase-2 bound to atp and 3pg

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004618molecular_functionphosphoglycerate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005929cellular_componentcilium
A0006094biological_processgluconeogenesis
A0006096biological_processglycolytic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0030317biological_processflagellated sperm motility
A0035686cellular_componentsperm fibrous sheath
A0043531molecular_functionADP binding
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004618molecular_functionphosphoglycerate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005929cellular_componentcilium
B0006094biological_processgluconeogenesis
B0006096biological_processglycolytic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0030317biological_processflagellated sperm motility
B0035686cellular_componentsperm fibrous sheath
B0043531molecular_functionADP binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP A 500
ChainResidue
AGLY212
AASN336
AGLY337
APRO338
AGLY340
AVAL341
AGLU343
AGLY373
AASP374
ATHR375
AGLY213
AALA214
ALYS219
AGLY237
AGLY238
ALEU256
AGLY312
ALEU313

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE 3PG B 501
ChainResidue
BHIS62
BARG122
BGLY166
BARG170

Functional Information from PROSITE/UniProt
site_idPS00111
Number of Residues11
DetailsPGLYCERATE_KINASE Phosphoglycerate kinase signature. RVIMRvDfNVP
ChainResidueDetails
AARG17-PRO27

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P00558","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18004764","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2P9T","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18004764","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2P9T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PAA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q7SIB7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"18004764","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PAA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues20
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"P00558","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P00558","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 13pk
ChainResidueDetails
AARG38
ALYS215
AGLY373
AGLY396

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 13pk
ChainResidueDetails
BARG38
BLYS215
BGLY396

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PDB entries from 2025-07-30

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