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2P40

Crystal Structure of Dengue Methyltransferase in Complex with 7MeGpppG

Functional Information from GO Data
ChainGOidnamespacecontents
A0003968molecular_functionRNA-directed RNA polymerase activity
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0005524molecular_functionATP binding
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 297
ChainResidue
ASER230
AASN233
AARG237

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 298
ChainResidue
ASER15
AASN18

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 299
ChainResidue
AARG84
AARG38
ALYS42
ASER56
AARG57

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 300
ChainResidue
AGLN34
AGLU49
AHIS52
AHIS53
ATRP64
AARG68
APRO209
AARG246

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
ALYS29
ALYS30
AARG57
AARG212

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 302
ChainResidue
ALYS105
APRO108
ASER151
APRO152
AARG160

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 303
ChainResidue
ALYS105
AASP131
APHE134
AARG160
AARG163

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 304
ChainResidue
AHIS110
AGLU111
AHOH322

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 305
ChainResidue
ALYS12
AARG16
AGLY261
ATHR262
AHOH348

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 306
ChainResidue
AARG57
ALYS61
AHOH317
AHOH336
AHOH338
AHOH349

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 307
ChainResidue
ASER56
AGLY83
AARG84
AGLU111

site_idBC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GTG A 308
ChainResidue
ALYS14
ALEU17
AASN18
ALEU20
APHE25
ALYS29
APRO108
ASER150
ASER151
APRO152
ASER214

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsRegion: {"description":"Interaction with host SCRIB","evidences":[{"source":"UniProtKB","id":"Q01299","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsMotif: {"description":"SUMO-interacting motif","evidences":[{"source":"UniProtKB","id":"P29990","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"12032088","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2P1D","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues7
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues2
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues3
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues1
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

248942

PDB entries from 2026-02-11

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