2OZ3
Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0009063 | biological_process | amino acid catabolic process |
| A | 0016052 | biological_process | carbohydrate catabolic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016836 | molecular_function | hydro-lyase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0009063 | biological_process | amino acid catabolic process |
| B | 0016052 | biological_process | carbohydrate catabolic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016836 | molecular_function | hydro-lyase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0009063 | biological_process | amino acid catabolic process |
| C | 0016052 | biological_process | carbohydrate catabolic process |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016836 | molecular_function | hydro-lyase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0009063 | biological_process | amino acid catabolic process |
| D | 0016052 | biological_process | carbohydrate catabolic process |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016836 | molecular_function | hydro-lyase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0009063 | biological_process | amino acid catabolic process |
| E | 0016052 | biological_process | carbohydrate catabolic process |
| E | 0016829 | molecular_function | lyase activity |
| E | 0016836 | molecular_function | hydro-lyase activity |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0009063 | biological_process | amino acid catabolic process |
| F | 0016052 | biological_process | carbohydrate catabolic process |
| F | 0016829 | molecular_function | lyase activity |
| F | 0016836 | molecular_function | hydro-lyase activity |
| F | 0046872 | molecular_function | metal ion binding |
| F | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0009063 | biological_process | amino acid catabolic process |
| G | 0016052 | biological_process | carbohydrate catabolic process |
| G | 0016829 | molecular_function | lyase activity |
| G | 0016836 | molecular_function | hydro-lyase activity |
| G | 0046872 | molecular_function | metal ion binding |
| G | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0009063 | biological_process | amino acid catabolic process |
| H | 0016052 | biological_process | carbohydrate catabolic process |
| H | 0016829 | molecular_function | lyase activity |
| H | 0016836 | molecular_function | hydro-lyase activity |
| H | 0046872 | molecular_function | metal ion binding |
| H | 0050032 | molecular_function | L-rhamnonate dehydratase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA B 2001 |
| Chain | Residue |
| B | ASP214 |
| B | GLU240 |
| B | GLU268 |
| B | HOH3066 |
| B | HOH3132 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NA D 2002 |
| Chain | Residue |
| D | ASP214 |
| D | GLU240 |
| D | GLU268 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 3001 |
| Chain | Residue |
| C | ASP106 |
| C | ASN110 |
| C | TRP274 |
| C | HOH3216 |
| C | HOH3236 |
| D | HOH3153 |
| B | LYS40 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 3002 |
| Chain | Residue |
| B | ASP106 |
| B | ASN110 |
| B | HOH3190 |
| B | HOH3239 |
| C | LYS40 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 3003 |
| Chain | Residue |
| A | VAL152 |
| A | ARG153 |
| A | GLN332 |
| A | HOH3173 |
| C | LYS40 |
| C | TYR41 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 3004 |
| Chain | Residue |
| A | LYS40 |
| A | TYR41 |
| B | VAL152 |
| B | ARG153 |
| B | GLN332 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL D 3005 |
| Chain | Residue |
| C | HOH3244 |
| D | LYS40 |
| D | TRP105 |
| D | ASP106 |
| D | ASN110 |
| D | ARG273 |
| D | TRP274 |
| D | HOH3157 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL D 3006 |
| Chain | Residue |
| C | VAL152 |
| C | ARG153 |
| C | GLN332 |
| C | HOH3228 |
| D | LYS40 |
| D | TYR41 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL D 3007 |
| Chain | Residue |
| B | LYS40 |
| B | TYR41 |
| D | VAL152 |
| D | ARG153 |
| D | GLN332 |
| site_id | BC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL F 3008 |
| Chain | Residue |
| F | VAL152 |
| F | ARG153 |
| F | GLN332 |
| F | HOH3136 |
| F | HOH3151 |
| H | LYS40 |
| H | TYR41 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL G 3009 |
| Chain | Residue |
| G | ASP106 |
| G | ASN110 |
| G | ARG273 |
| G | HOH3105 |
| G | HOH3154 |
| G | HOH3158 |
| H | LYS40 |
| site_id | BC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL E 3010 |
| Chain | Residue |
| E | TRP105 |
| E | ASP106 |
| E | TYR109 |
| E | ASN110 |
| E | TRP274 |
| E | HOH3158 |
| F | LYS40 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL F 3011 |
| Chain | Residue |
| F | TRP105 |
| F | ASP106 |
| F | ARG273 |
| F | HOH3046 |
| F | HOH3091 |
| F | HOH3101 |
| G | HOH3092 |
| site_id | BC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL H 3012 |
| Chain | Residue |
| E | GLN332 |
| G | LYS40 |
| H | TRP105 |
| H | ASP106 |
| H | TYR109 |
| H | ASN110 |
| H | ARG273 |
| site_id | BC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL G 3013 |
| Chain | Residue |
| F | GLU102 |
| F | LEU147 |
| F | LEU302 |
| G | LEU147 |
| G | LEU148 |
| G | GLY149 |
| G | LEU302 |
| G | HOH3141 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 3014 |
| Chain | Residue |
| A | PRO361 |
| A | ARG372 |
| A | HOH3269 |
| site_id | BC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 3016 |
| Chain | Residue |
| A | GLU360 |
| A | HOH3099 |
| A | HOH3234 |
| C | ASP347 |
| A | PRO351 |
| A | LEU357 |
| A | GLY359 |
| site_id | BC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL D 3017 |
| Chain | Residue |
| C | GOL3022 |
| D | GLU102 |
| D | LEU147 |
| D | HOH3127 |
| site_id | CC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL H 3018 |
| Chain | Residue |
| E | LEU147 |
| E | HOH3132 |
| H | GLU102 |
| H | LEU302 |
| site_id | CC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 3019 |
| Chain | Residue |
| C | GLN157 |
| C | PRO335 |
| C | HOH3226 |
| site_id | CC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 3020 |
| Chain | Residue |
| C | GLU155 |
| C | GLU364 |
| C | ARG367 |
| C | MSE368 |
| C | ARG369 |
| C | ARG372 |
| C | HOH3141 |
| site_id | CC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 3021 |
| Chain | Residue |
| B | ASP220 |
| B | LEU221 |
| B | ASN222 |
| D | ASP286 |
| D | ASN312 |
| D | ALA313 |
| D | LEU314 |
| site_id | CC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 3022 |
| Chain | Residue |
| C | GLU102 |
| C | THR299 |
| C | LEU302 |
| C | LYS303 |
| C | HOH3189 |
| D | LEU302 |
| D | ARG331 |
| D | GOL3017 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 3023 |
| Chain | Residue |
| A | LYS40 |
| A | ASP106 |
| A | ASN110 |
| A | LEU113 |
| A | TRP274 |
| A | HOH3076 |
| site_id | CC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 3024 |
| Chain | Residue |
| A | GLN157 |
| A | TRP210 |
| A | HOH3231 |
| C | PRO184 |
| C | SER185 |
| site_id | CC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL H 3025 |
| Chain | Residue |
| F | LYS237 |
| F | MSE263 |
| F | PHE336 |
| H | ASP220 |
| H | ASN222 |
| H | TYR223 |
| site_id | CC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL C 3026 |
| Chain | Residue |
| C | ARG164 |
| C | ARG204 |
| site_id | DC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL C 3027 |
| Chain | Residue |
| C | ILE30 |
| C | ARG48 |
| C | THR161 |
| C | ASP214 |
| C | HOH3064 |
| site_id | DC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 3028 |
| Chain | Residue |
| A | TRP249 |
| A | GLU281 |
| A | MSE282 |
| site_id | DC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 3029 |
| Chain | Residue |
| B | GLU281 |
| C | TRP249 |
| C | MSE282 |
| site_id | DC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 3030 |
| Chain | Residue |
| A | ASP67 |
| A | ASN69 |
| site_id | DC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 3031 |
| Chain | Residue |
| A | HIS22 |
| A | ILE30 |
| A | ILE34 |
| A | ARG48 |
| A | THR161 |
| A | ASP214 |
| A | TRP216 |
| A | HOH3057 |
| A | HOH3264 |
| site_id | DC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 3032 |
| Chain | Residue |
| A | GLY235 |
| A | LEU236 |
| A | HOH3066 |
| C | ARG226 |
| C | HOH3242 |
Functional Information from PROSITE/UniProt
| site_id | PS00908 |
| Number of Residues | 26 |
| Details | MR_MLE_1 Mandelate racemase / muconate lactonizing enzyme family signature 1. TiSGVDlALwDLlGKvrrePVhqLLG |
| Chain | Residue | Details |
| A | THR124-GLY149 |
