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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2OOG

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006629	biological_process	lipid metabolic process
A	0008081	molecular_function	phosphoric diester hydrolase activity
A	0046872	molecular_function	metal ion binding
B	0006629	biological_process	lipid metabolic process
B	0008081	molecular_function	phosphoric diester hydrolase activity
B	0046872	molecular_function	metal ion binding
C	0006629	biological_process	lipid metabolic process
C	0008081	molecular_function	phosphoric diester hydrolase activity
C	0046872	molecular_function	metal ion binding
D	0006629	biological_process	lipid metabolic process
D	0008081	molecular_function	phosphoric diester hydrolase activity
D	0046872	molecular_function	metal ion binding
E	0006629	biological_process	lipid metabolic process
E	0008081	molecular_function	phosphoric diester hydrolase activity
E	0046872	molecular_function	metal ion binding
F	0006629	biological_process	lipid metabolic process
F	0008081	molecular_function	phosphoric diester hydrolase activity
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN A 403

Chain	Residue
A	GLU87
A	ASP89
A	GLU169
A	GOL455
A	HOH593
A	HOH639

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 441

Chain	Residue
A	HIS217
A	ARG246

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 442

Chain	Residue
A	SER209
A	ASP210
A	GLU211
A	SER172

site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 445

Chain	Residue
A	HIS191
A	ASN194

site_id	AC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN B 401

Chain	Residue
B	GLU87
B	ASP89
B	GLU169
B	GOL452
B	HOH642
B	HOH652

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 B 443

Chain	Residue
B	SER172
B	SER209
B	ASP210
B	GLU211
B	HOH517

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN C 406

Chain	Residue
C	GLU87
C	ASP89
C	GLU169
C	GOL451
C	HOH484

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 C 446

Chain	Residue
C	SER172
C	SER209
C	ASP210
C	GLU211
C	HOH508
C	HOH509

site_id	AC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN D 405

Chain	Residue
D	GLU87
D	ASP89
D	GLU169
D	GOL453
D	HOH549
D	HOH656

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 D 444

Chain	Residue
D	SER209
D	ASP210
D	GLU211

site_id	BC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN E 404

Chain	Residue
E	GLU87
E	ASP89
E	GLU169
E	GOL454
E	HOH512
E	HOH534

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE ZN F 402

Chain	Residue
F	GLU87
F	ASP89
F	GLU169
F	GOL456
F	HOH512
F	HOH554

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 455

Chain	Residue
A	HIS59
A	GLU87
A	GLU169
A	GLN206
A	ZN403
A	HOH650

site_id	BC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL A 470

Chain	Residue
A	GLN72
A	ASP75

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 489

Chain	Residue
A	ASP154
A	GLU158
A	LYS189
A	GOL487
A	HOH686

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 475

Chain	Residue
A	LYS76
A	ARG142
A	HOH530
F	GLU158
F	ARG159

site_id	BC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 476

Chain	Residue
A	GLU80
A	ARG142
A	HOH654

site_id	BC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL A 487

Chain	Residue
A	LYS189
A	HIS191
A	GOL489

site_id	CC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL B 452

Chain	Residue
B	HIS59
B	GLU87
B	GLU169
B	GLN206
B	PHE297
B	ZN401
B	HOH598
B	HOH652

site_id	CC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL B 458

Chain	Residue
B	ASP75
B	HIS78
B	ASN79
B	ARG159
B	TYR160
D	ARG142

site_id	CC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 461

Chain	Residue
B	ARG142
B	ALA143
B	SER144

site_id	CC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 469

Chain	Residue
B	LEU81
B	LYS305
B	HOH539
B	GLU80

site_id	CC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL B 472

Chain	Residue
B	GLN235
B	GLN236

site_id	CC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 473

Chain	Residue
B	ASN238
B	ASP239
B	GLN240
B	HOH562

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL B 477

Chain	Residue
B	ASN163
B	ASN196
B	LYS197
B	ASN200
B	HIS202
D	LYS309

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL B 478

Chain	Residue
B	HIS191
B	ASN194
B	HOH546
B	HOH558
B	HOH655

site_id	CC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 479

Chain	Residue
B	GLU158
B	HIS190
B	HIS191
B	HOH569

site_id	DC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 480

Chain	Residue
B	HIS217
B	ARG246
B	SER247

site_id	DC2
Number of Residues	10
Details	BINDING SITE FOR RESIDUE GOL C 451

Chain	Residue
C	HIS59
C	GLU87
C	GLU169
C	GLN206
C	LEU228
C	TYR277
C	PHE297
C	ZN406
C	HOH485
C	HOH559

site_id	DC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL C 482

Chain	Residue
C	HIS97
C	HOH542
D	GOL481

site_id	DC4
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL D 453

Chain	Residue
D	HIS59
D	GLU87
D	GLU169
D	GLN206
D	PHE297
D	ZN405
D	HOH602
D	HOH656
D	HOH664

site_id	DC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 462

Chain	Residue
B	LYS305
B	HOH640
B	HOH657
D	ASN51
D	GOL484
D	HOH594

site_id	DC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 463

Chain	Residue
B	LYS309
D	ASN196
D	LYS197
D	ASN200
D	HIS202

site_id	DC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL D 466

Chain	Residue
D	GLN219
D	ASN220
D	LYS221

site_id	DC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL D 468

Chain	Residue
D	THR152
D	GLU155

site_id	DC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 471

Chain	Residue
B	ARG159
D	ASN134
D	ALA141
D	LYS146
D	HOH531
D	HOH574

site_id	EC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL D 481

Chain	Residue
C	LYS189
C	GOL482
C	HOH542
C	HOH548
D	LYS215
D	ARG218
D	GLN219

site_id	EC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL D 483

Chain	Residue
D	HIS78
D	ASN79
D	LYS82
D	HOH572

site_id	EC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL D 484

Chain	Residue
D	THR50
D	GLU52
D	SER84
D	ASN165
D	GOL462
D	HOH581

site_id	EC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL E 454

Chain	Residue
E	HIS59
E	GLN206
E	PHE208
E	TYR277
E	PHE297
E	ZN404
E	HOH534

site_id	EC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL E 465

Chain	Residue
E	GLY96
E	HIS97
E	LEU98
E	GLN182
F	LYS215
F	GOL459

site_id	EC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL E 467

Chain	Residue
E	LYS215
E	ARG218
F	LYS189

site_id	EC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL E 474

Chain	Residue
E	GLU281
E	LYS282
E	LYS303

site_id	EC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL E 485

Chain	Residue
E	ARG142
E	ALA143
E	SER144
F	ARG142
F	ALA143

site_id	EC9
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL F 456

Chain	Residue
F	HIS59
F	GLU87
F	GLU169
F	GLN206
F	TYR277
F	PHE297
F	ZN402
F	HOH512

site_id	FC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL F 457

Chain	Residue
A	HOH654
F	ASP75
F	HIS78
F	ASN79
F	ARG159
F	TYR160

site_id	FC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL F 459

Chain	Residue
E	GOL465
F	ARG218
F	HOH497

site_id	FC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL F 460

Chain	Residue
F	LYS188
F	HIS191
F	ASN194
F	HOH555

site_id	FC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL F 464

Chain	Residue
A	HOH530
F	GLU158
F	LYS189
F	HIS190
F	HIS191

site_id	FC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL F 486

Chain	Residue
F	ARG246
F	HOH526
F	HOH572

site_id	FC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL F 488

Chain	Residue
F	SER172
F	PHE208
F	SER209
F	ASP210
F	GLU211

245011

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