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2OF1

Cryogenic crystal structure of the Staphylococcal Nuclease variant truncated Delta+PHS I92W

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 502
ChainResidue
AALA1
AASP21
AARG35
AASP40
ATHR41
AGLU43
AHOH220

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DMS A 403
ChainResidue
ALYS134
AASN68
AALA69

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE THP A 501
ChainResidue
AALA1
ATHR4
ALYS5
APRO11
AARG35
ALYS84
ATYR85
AARG87
ALEU89
ATYR113
AHOH211
AHOH212
AHOH218
AHOH225
AHOH226
AHOH234
AHOH235
AHOH268
AHOH269
AHOH271
AHOH302
AHOH303

Functional Information from PROSITE/UniProt
site_idPS01123
Number of Residues25
DetailsTNASE_1 Thermonuclease family signature 1. DGDTVkLmykgqpmtf.RLllVDtPE
ChainResidueDetails
AASP19-GLU43

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsActive site: {"evidences":[{"source":"PubMed","id":"288045","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a2t
ChainResidueDetails
AARG35
AARG87

site_idMCSA1
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
AASP21metal ligand
AARG35electrostatic stabiliser, hydrogen bond donor
AASP40metal ligand
ATHR41metal ligand
AGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AARG87electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2025-12-17

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