2O6H
Lumazine synthase RibH1 from Brucella melitensis (Gene BMEI1187, Swiss-Prot entry Q8YGH2) complexed with inhibitor 5-Nitro-6-(D-Ribitylamino)-2,4(1H,3H) Pyrimidinedione
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0009231 | biological_process | riboflavin biosynthetic process |
A | 0009349 | cellular_component | riboflavin synthase complex |
A | 0016740 | molecular_function | transferase activity |
B | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
B | 0005829 | cellular_component | cytosol |
B | 0009231 | biological_process | riboflavin biosynthetic process |
B | 0009349 | cellular_component | riboflavin synthase complex |
B | 0016740 | molecular_function | transferase activity |
C | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0009231 | biological_process | riboflavin biosynthetic process |
C | 0009349 | cellular_component | riboflavin synthase complex |
C | 0016740 | molecular_function | transferase activity |
D | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
D | 0005829 | cellular_component | cytosol |
D | 0009231 | biological_process | riboflavin biosynthetic process |
D | 0009349 | cellular_component | riboflavin synthase complex |
D | 0016740 | molecular_function | transferase activity |
E | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
E | 0005829 | cellular_component | cytosol |
E | 0009231 | biological_process | riboflavin biosynthetic process |
E | 0009349 | cellular_component | riboflavin synthase complex |
E | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA A 301 |
Chain | Residue |
A | ALA67 |
A | GLU73 |
E | ALA67 |
E | GLU73 |
site_id | AC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CA A 302 |
Chain | Residue |
A | GLU124 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA B 303 |
Chain | Residue |
B | ALA67 |
B | GLU73 |
D | ALA67 |
D | GLU73 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA C 304 |
Chain | Residue |
C | ALA67 |
C | GLU73 |
C | GLU73 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CA C 305 |
Chain | Residue |
A | HOH404 |
C | GLU124 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA D 306 |
Chain | Residue |
D | ASP24 |
D | ASP25 |
D | ASP28 |
D | HOH484 |
site_id | AC7 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE INI A 201 |
Chain | Residue |
A | PHE22 |
A | TYR23 |
A | GLY52 |
A | ALA53 |
A | LEU54 |
A | GLU55 |
A | THR82 |
A | VAL83 |
A | HIS90 |
A | VAL94 |
A | HOH403 |
E | ASN115 |
E | PHE140 |
site_id | AC8 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE INI B 202 |
Chain | Residue |
A | ASN115 |
A | PHE140 |
B | PHE22 |
B | TYR23 |
B | GLY52 |
B | ALA53 |
B | LEU54 |
B | GLU55 |
B | THR82 |
B | VAL83 |
B | ILE84 |
B | HIS90 |
B | VAL94 |
B | HOH422 |
site_id | AC9 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE INI C 203 |
Chain | Residue |
B | GLY114 |
B | ASN115 |
B | PHE140 |
B | ALA144 |
C | PHE22 |
C | TYR23 |
C | GLY52 |
C | ALA53 |
C | LEU54 |
C | GLU55 |
C | THR82 |
C | VAL83 |
C | ILE84 |
C | HIS90 |
C | VAL94 |
C | HOH438 |
site_id | BC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE INI D 204 |
Chain | Residue |
C | ASN115 |
C | PHE140 |
D | PHE22 |
D | TYR23 |
D | GLY52 |
D | ALA53 |
D | LEU54 |
D | GLU55 |
D | THR82 |
D | VAL83 |
D | ILE84 |
D | HIS90 |
D | VAL94 |
site_id | BC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE INI E 205 |
Chain | Residue |
D | ASN115 |
D | PHE140 |
E | PHE22 |
E | TYR23 |
E | GLY52 |
E | ALA53 |
E | LEU54 |
E | GLU55 |
E | THR82 |
E | VAL83 |
E | ILE84 |
E | HIS90 |
E | VAL94 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: Proton donor => ECO:0000255 |
Chain | Residue | Details |
A | HIS90 | |
B | HIS90 | |
C | HIS90 | |
D | HIS90 | |
E | HIS90 |
site_id | SWS_FT_FI2 |
Number of Residues | 20 |
Details | BINDING: |
Chain | Residue | Details |
A | PHE22 | |
C | ALA53 | |
C | THR82 | |
C | ASN115 | |
D | PHE22 | |
D | ALA53 | |
D | THR82 | |
D | ASN115 | |
E | PHE22 | |
E | ALA53 | |
E | THR82 | |
A | ALA53 | |
E | ASN115 | |
A | THR82 | |
A | ASN115 | |
B | PHE22 | |
B | ALA53 | |
B | THR82 | |
B | ASN115 | |
C | PHE22 |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | GLU87 | |
E | ARG129 | |
A | ARG129 | |
B | GLU87 | |
B | ARG129 | |
C | GLU87 | |
C | ARG129 | |
D | GLU87 | |
D | ARG129 | |
E | GLU87 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
A | HIS90 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
B | HIS90 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
C | HIS90 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
D | HIS90 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
E | HIS90 |