Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2NVA

The X-ray crystal structure of the Paramecium bursaria Chlorella virus arginine decarboxylase bound to agmatine

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0004586	molecular_function	ornithine decarboxylase activity
A	0006596	biological_process	polyamine biosynthetic process
A	0016829	molecular_function	lyase activity
A	0033387	biological_process	putrescine biosynthetic process from ornithine
B	0003824	molecular_function	catalytic activity
B	0004586	molecular_function	ornithine decarboxylase activity
B	0006596	biological_process	polyamine biosynthetic process
B	0016829	molecular_function	lyase activity
B	0033387	biological_process	putrescine biosynthetic process from ornithine
C	0003824	molecular_function	catalytic activity
C	0004586	molecular_function	ornithine decarboxylase activity
C	0006596	biological_process	polyamine biosynthetic process
C	0016829	molecular_function	lyase activity
C	0033387	biological_process	putrescine biosynthetic process from ornithine
D	0003824	molecular_function	catalytic activity
D	0004586	molecular_function	ornithine decarboxylase activity
D	0006596	biological_process	polyamine biosynthetic process
D	0016829	molecular_function	lyase activity
D	0033387	biological_process	putrescine biosynthetic process from ornithine
E	0003824	molecular_function	catalytic activity
E	0004586	molecular_function	ornithine decarboxylase activity
E	0006596	biological_process	polyamine biosynthetic process
E	0016829	molecular_function	lyase activity
E	0033387	biological_process	putrescine biosynthetic process from ornithine
F	0003824	molecular_function	catalytic activity
F	0004586	molecular_function	ornithine decarboxylase activity
F	0006596	biological_process	polyamine biosynthetic process
F	0016829	molecular_function	lyase activity
F	0033387	biological_process	putrescine biosynthetic process from ornithine
G	0003824	molecular_function	catalytic activity
G	0004586	molecular_function	ornithine decarboxylase activity
G	0006596	biological_process	polyamine biosynthetic process
G	0016829	molecular_function	lyase activity
G	0033387	biological_process	putrescine biosynthetic process from ornithine
H	0003824	molecular_function	catalytic activity
H	0004586	molecular_function	ornithine decarboxylase activity
H	0006596	biological_process	polyamine biosynthetic process
H	0016829	molecular_function	lyase activity
H	0033387	biological_process	putrescine biosynthetic process from ornithine

Functional Information from PDB Data

site_id	AC1
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 A 2001

Chain	Residue
A	ASP67
A	GLY254
A	ARG255
A	ASN292
A	PHE295
A	GLU296
A	TYR353
A	HOH2008
A	HOH2009
A	HOH2138
B	TYR287
A	ALA90
B	CYS324
B	ASP325
A	LEU145
A	HIS176
A	SER179
A	GLY180
A	GLY215
A	GLY216
A	GLU252

site_id	AC2
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 B 2002

Chain	Residue
A	TYR287
A	CYS324
A	ASP325
B	LYS48
B	ASP67
B	ALA90
B	HIS176
B	SER179
B	GLY180
B	GLY215
B	GLY216
B	GLU252
B	GLY254
B	ARG255
B	ASN292
B	PHE295
B	GLU296
B	TYR353
B	HOH2011
B	HOH2037
B	HOH2088

site_id	AC3
Number of Residues	20
Details	BINDING SITE FOR RESIDUE PL2 C 2003

Chain	Residue
C	ASP67
C	ALA90
C	HIS176
C	SER179
C	GLY180
C	GLY215
C	GLY216
C	GLU252
C	GLY254
C	ARG255
C	ASN292
C	PHE295
C	GLU296
C	TYR353
C	HOH2008
C	HOH2021
C	HOH2053
D	TYR287
D	CYS324
D	ASP325

site_id	AC4
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 D 2004

Chain	Residue
C	TYR287
C	CYS324
C	ASP325
D	LYS48
D	ASP67
D	ALA90
D	HIS176
D	SER179
D	GLY180
D	GLY215
D	GLY216
D	GLU252
D	GLY254
D	ARG255
D	ASN292
D	PHE295
D	GLU296
D	TYR353
D	HOH2005
D	HOH2023
D	HOH2035

site_id	AC5
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 E 2005

Chain	Residue
E	HOH2050
E	HOH2163
F	TYR287
F	CYS324
F	ASP325
E	LYS48
E	ASP67
E	ALA90
E	HIS176
E	SER179
E	GLY180
E	GLY215
E	GLY216
E	GLU252
E	GLY254
E	ARG255
E	ASN292
E	PHE295
E	GLU296
E	TYR353
E	HOH2007

site_id	AC6
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 F 2006

Chain	Residue
E	TYR287
E	CYS324
E	ASP325
F	LYS48
F	ASP67
F	ALA90
F	HIS176
F	SER179
F	GLY180
F	GLY215
F	GLY216
F	GLU252
F	GLY254
F	ARG255
F	ASN292
F	PHE295
F	GLU296
F	TYR353
F	HOH2009
F	HOH2048
F	HOH2072

site_id	AC7
Number of Residues	21
Details	BINDING SITE FOR RESIDUE PL2 G 2007

Chain	Residue
G	LYS48
G	ASP67
G	ALA90
G	HIS176
G	SER179
G	GLY180
G	GLY215
G	GLY216
G	GLU252
G	GLY254
G	ARG255
G	ASN292
G	PHE295
G	GLU296
G	TYR353
G	HOH2009
G	HOH2042
G	HOH2047
H	TYR287
H	CYS324
H	ASP325

site_id	AC8
Number of Residues	22
Details	BINDING SITE FOR RESIDUE PL2 H 2008

Chain	Residue
G	TYR287
G	CYS324
G	ASP325
H	LYS48
H	ASP67
H	ALA90
H	VAL143
H	HIS176
H	SER179
H	GLY180
H	GLY215
H	GLY216
H	GLU252
H	GLY254
H	ARG255
H	ASN292
H	PHE295
H	GLU296
H	TYR353
H	HOH2015
H	HOH2024
H	HOH2069

Catalytic Information from CSA

site_id	CSA1
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
F	LYS48
F	LYS148

site_id	CSA10
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
B	LYS48
B	GLU252
B	HIS176

site_id	CSA11
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
C	LYS48
C	GLU252
C	HIS176

site_id	CSA12
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
D	LYS48
D	GLU252
D	HIS176

site_id	CSA13
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
E	LYS48
E	GLU252
E	HIS176

site_id	CSA14
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
F	LYS48
F	GLU252
F	HIS176

site_id	CSA15
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
G	LYS48
G	GLU252
G	HIS176

site_id	CSA16
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
H	LYS48
H	GLU252
H	HIS176

site_id	CSA2
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
A	LYS48
A	LYS148

site_id	CSA3
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
E	LYS48
E	LYS148

site_id	CSA4
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
B	LYS48
B	LYS148

site_id	CSA5
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
H	LYS48
H	LYS148

site_id	CSA6
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
C	LYS48
C	LYS148

site_id	CSA7
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
D	LYS48
D	LYS148

site_id	CSA8
Number of Residues	2
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
G	LYS48
G	LYS148

site_id	CSA9
Number of Residues	3
Details	Annotated By Reference To The Literature 1bd0

Chain	Residue	Details
A	LYS48
A	GLU252
A	HIS176

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)