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2NP6

Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target position

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0006304biological_processDNA modification
A0008168molecular_functionmethyltransferase activity
A0009007molecular_functionsite-specific DNA-methyltransferase (adenine-specific) activity
A0009307biological_processDNA restriction-modification system
A0032259biological_processmethylation
D0003676molecular_functionnucleic acid binding
D0003677molecular_functionDNA binding
D0006304biological_processDNA modification
D0008168molecular_functionmethyltransferase activity
D0009007molecular_functionsite-specific DNA-methyltransferase (adenine-specific) activity
D0009307biological_processDNA restriction-modification system
D0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NEA A 601
ChainResidue
AARG20
AASP89
APHE90
AASN105
APRO107
APHE146
AHOH724
AHOH788
AHOH850
AHOH907
AVAL21
AALA47
AALA49
AGLU71
AILE72
AASP73
AALA76
AALA88

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE NEA D 602
ChainResidue
DVAL21
DALA47
DGLU71
DILE72
DALA88
DASP89
DPHE90
DASN105
DPRO107
DPHE146
DGOL701
DGOL702
DHOH786

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 701
ChainResidue
DVAL121
DTYR129
DLEU142
DNEA602

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 702
ChainResidue
DVAL21
DASN105
DPRO106
DPRO107
DTYR108
DLYS199
DNEA602

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IPA A 703
ChainResidue
AILE242
AARG244
AGLU246
AARG402
AHOH869

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IPA E 704
ChainResidue
DARG296
EDG8
FDA14
FDT15

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IPA B 705
ChainResidue
AARG296
BDG8
BDT9
CDT15
CHOH26

Functional Information from PROSITE/UniProt
site_idPS00092
Number of Residues7
DetailsN6_MTASE N-6 Adenine-specific DNA methylases signature. ILGNPPY
ChainResidueDetails
AILE102-TYR108

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0007744|PDB:2ADM
ChainResidueDetails
ATHR23
DPRO107
AGLU45
AGLU71
AASP89
APRO107
DTHR23
DGLU45
DGLU71
DASP89

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Important for catalytic activity => ECO:0007744|PDB:2ADM
ChainResidueDetails
AASN105
ATYR108
DASN105
DTYR108

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Important for catalytic activity; via amide nitrogen => ECO:0007744|PDB:2ADM
ChainResidueDetails
APRO106
DPRO106

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 2adm
ChainResidueDetails
APRO106
AASN105
ATYR108

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 2adm
ChainResidueDetails
DPRO106
DASN105
DTYR108

site_idMCSA1
Number of Residues4
DetailsM-CSA 46
ChainResidueDetails
AASN105activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
APRO106activator, electrostatic stabiliser, hydrogen bond acceptor
ATYR108electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
APHE196steric role

site_idMCSA2
Number of Residues4
DetailsM-CSA 46
ChainResidueDetails
DASN105activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
DPRO106activator, electrostatic stabiliser, hydrogen bond acceptor
DTYR108electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
DPHE196steric role

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PDB entries from 2024-07-31

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