Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2NMY

Crystal structure analysis of HIV-1 protease mutant V82A with a inhibitor saquinavir

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0042802molecular_functionidentical protein binding
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL B 501
ChainResidue
BTRP106

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 502
ChainResidue
ATHR74
AASN88
AHOH1141
BARG141

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 503
ChainResidue
AHOH1157
AASP60
AHOH1057
AHOH1080
AHOH1120

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 504
ChainResidue
AMET46
APHE53
AHOH1171
AHOH1213
BILE172
BGLY173
BGLN192

site_idAC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE ROC A 401
ChainResidue
AARG8
AASP25
AGLY27
AASP29
AASP30
AGLY48
AGLY49
AILE50
AILE84
AHOH1006
AHOH1018
AHOH1127
BARG108
BASP125
BGLY127
BASP129
BASP130
BGLY148
BGLY149
BILE150
BPRO181
BILE184
BHOH1060

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ALLDTGADDTVI
ChainResidueDetails
AALA22-ILE33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For protease activity; shared with dimeric partner => ECO:0000255|PROSITE-ProRule:PRU10094
ChainResidueDetails
ATHR26
BTHR126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
APRO1
BPRO101

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a30
ChainResidueDetails
AASP25
ATHR26
BTHR126
BASP125

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a30
ChainResidueDetails
AASP25
BASP125

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon