Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2NAD

HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0008863molecular_functionformate dehydrogenase (NAD+) activity
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0042183biological_processformate catabolic process
A0051287molecular_functionNAD binding
B0005737cellular_componentcytoplasm
B0008863molecular_functionformate dehydrogenase (NAD+) activity
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0042183biological_processformate catabolic process
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AZI A 395
ChainResidue
APRO97
APHE98
AGLY121
AILE122
AASN146
AARG284
AHIS332
ANAD394

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 396
ChainResidue
BHIS263
BLYS286
BCYS288
BASP289
BARG290
BHOH448
BHOH675
AHOH523

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE AZI B 395
ChainResidue
BPRO97
BPHE98
BILE122
BASN146
BARG284
BHIS332
BNAD394

site_idAC4
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD A 394
ChainResidue
APHE98
AILE122
AASN146
ASER147
AVAL150
AALA198
AGLY200
AARG201
AILE202
AASP221
AARG222
AHIS223
AASN254
APRO256
AHIS258
AGLU260
ATHR261
ATHR282
AALA283
AARG284
AASP308
AVAL309
AHIS332
ASER334
AGLY335
ASER380
ATYR381
AAZI395
AHOH409
AHOH412
AHOH425
AHOH453
AHOH460
AHOH499
AHOH578

site_idAC5
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD B 394
ChainResidue
BPHE98
BILE122
BASN146
BSER147
BVAL150
BALA198
BGLY200
BARG201
BILE202
BASP221
BARG222
BHIS223
BASN254
BPRO256
BHIS258
BGLU260
BTHR261
BTHR282
BALA283
BARG284
BASP308
BHIS332
BSER334
BGLY335
BSER380
BTYR381
BAZI395
BHOH397
BHOH398
BHOH399
BHOH400
BHOH426
BHOH436
BHOH495
BHOH575

Functional Information from PROSITE/UniProt
site_idPS00065
Number of Residues28
DetailsD_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. VGTVAaGRIGlavlrrlapfdvh.LHyTD
ChainResidueDetails
AVAL194-ASP221

site_idPS00670
Number of Residues23
DetailsD_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. MYpvCDVVtLNcPlhpeTehMiN
ChainResidueDetails
AMET244-ASN266

site_idPS00671
Number of Residues17
DetailsD_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. FKrGaYIVNtARGkLCD
ChainResidueDetails
APHE273-ASP289

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03210, ECO:0000269|DOI:10.1134/S1063774506040146
ChainResidueDetails
AGLY123
ASER147
BGLY123
BSER147

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03210, ECO:0000269|PubMed:8114093
ChainResidueDetails
AILE148
BILE202
BARG222
BLEU257
BALA283
BVAL309
BILE333
BTYR381
AILE202
AARG222
ALEU257
AALA283
AVAL309
AILE333
ATYR381
BILE148

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Important for catalytic activity => ECO:0000255|HAMAP-Rule:MF_03210, ECO:0000305|PubMed:8114093
ChainResidueDetails
AGLY285
AILE333
BGLY285
BILE333

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 2nac
ChainResidueDetails
AGLN313
AHIS332
AASN146
AARG284

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 2nac
ChainResidueDetails
BGLN313
BHIS332
BASN146
BARG284

site_idMCSA1
Number of Residues4
DetailsM-CSA 902
ChainResidueDetails
ASER147electrostatic stabiliser
AGLY285electrostatic stabiliser
APRO314modifies pKa
AILE333enhance reactivity

site_idMCSA2
Number of Residues4
DetailsM-CSA 902
ChainResidueDetails
BSER147electrostatic stabiliser
BGLY285electrostatic stabiliser
BPRO314modifies pKa
BILE333enhance reactivity

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon