2JNB
Solution Structure of RNA-binding protein 15.5K
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000244 | biological_process | spliceosomal tri-snRNP complex assembly |
| A | 0000245 | biological_process | spliceosomal complex assembly |
| A | 0000387 | biological_process | spliceosomal snRNP assembly |
| A | 0000388 | biological_process | spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) |
| A | 0000398 | biological_process | mRNA splicing, via spliceosome |
| A | 0000451 | biological_process | rRNA 2'-O-methylation |
| A | 0000492 | biological_process | box C/D snoRNP assembly |
| A | 0001651 | cellular_component | dense fibrillar component |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005681 | cellular_component | spliceosomal complex |
| A | 0005690 | cellular_component | U4atac snRNP |
| A | 0005730 | cellular_component | nucleolus |
| A | 0006397 | biological_process | mRNA processing |
| A | 0008380 | biological_process | RNA splicing |
| A | 0016556 | biological_process | mRNA modification |
| A | 0030182 | biological_process | neuron differentiation |
| A | 0030490 | biological_process | maturation of SSU-rRNA |
| A | 0030515 | molecular_function | snoRNA binding |
| A | 0030621 | molecular_function | U4 snRNA binding |
| A | 0030622 | molecular_function | U4atac snRNA binding |
| A | 0031428 | cellular_component | box C/D methylation guide snoRNP complex |
| A | 0032040 | cellular_component | small-subunit processome |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0034511 | molecular_function | U3 snoRNA binding |
| A | 0034512 | molecular_function | box C/D sno(s)RNA binding |
| A | 0042254 | biological_process | ribosome biogenesis |
| A | 0042274 | biological_process | ribosomal small subunit biogenesis |
| A | 0046540 | cellular_component | U4/U6 x U5 tri-snRNP complex |
| A | 0051117 | molecular_function | ATPase binding |
| A | 0071005 | cellular_component | U2-type precatalytic spliceosome |
| A | 0071011 | cellular_component | precatalytic spliceosome |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PROSITE/UniProt
| site_id | PS01082 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CedknVPYvfVrSKqaLG |
| Chain | Residue | Details |
| A | CYS73-GLY90 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 12 |
| Details | Region: {"description":"Interaction with U4 snRNA and U4atac snRNA","evidences":[{"source":"PubMed","id":"17412961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21784869","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 32 |
| Details | Region: {"description":"Important for U4 snRNA-binding","evidences":[{"source":"PubMed","id":"10545122","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Site: {"description":"Interaction with U4 snRNA and U4atac snRNA","evidences":[{"source":"PubMed","id":"17412961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21784869","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N-acetylthreonine; in NHP2-like protein 1, N-terminally processed","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2005","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V."]}},{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"25944712","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q9D0T1","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
